[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 773 items for (author: huang & sk)


EMDB Unreleased entry

EMDB-76165:
Nipah virus fusion protein with 20G7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P


EMDB Unreleased entry

EMDB-76168:
Nipah virus fusion protein ectodomain in complex with 8C7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P


EMDB Unreleased entry

EMDB-76170:
Hendra virus fusion protein ectodomain in complex with 9A9 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-57888:
HIV-1 CA hexamer (MX2 bound)
Method: single particle / : Goodale A, DiMaio F, Bergeron JRC

EMDB-57889:
Unbound HIV-1 CA hexamer
Method: single particle / : Goodale A, DiMaio F, Bergeron JRC

EMDB-57890:
HIV-1 capsid tri-hexamer bound to MX2
Method: single particle / : Goodale A, DiMaio F, Bergeron JRC

EMDB-57891:
HIV-1 CA tri-hexamer interface
Method: single particle / : Goodale A, DiMaio F, Bergeron JRC

PDB-30od:
HIV-1 CA hexamer (MX2 bound)
Method: single particle / : Goodale A, DiMaio F, Bergeron JRC

PDB-30oe:
Unbound HIV-1 CA hexamer
Method: single particle / : Goodale A, DiMaio F, Bergeron JRC

PDB-30of:
HIV-1 capsid tri-hexamer bound to MX2
Method: single particle / : Goodale A, DiMaio F, Bergeron JRC

PDB-30og:
HIV-1 CA tri-hexamer interface
Method: single particle / : Goodale A, DiMaio F, Bergeron JRC

EMDB-48133:
Cryo-EM local map of 4 VRC35 Fabs bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48131:
Cryo-EM map of 12 VRC35 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48134:
Cryo-EM local map of 2 VRC35 Fabs bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9nz0:
Cryo-EM structure of vaccine elicited antibody 22F5 bound to the post-fusion conformation of the LayV-F glycoprotein
Method: single particle / : Kumar U, May A, Acharya P

EMDB-48715:
Cryo-EM map of vaccine elicited antibody 22F5 bound to post-fusion conformation of Langya virus F protein
Method: single particle / : Kumar U, Acharya P

EMDB-49948:
Cryo-EM structure of antibody 22F5 in complex with pre-fusion stabilized LayV-F
Method: single particle / : May AJ, Kumar U, Acharya P

PDB-9nz2:
Cryo-EM structure of antibody 22F5 in complex with pre-fusion stabilized LayV-F
Method: single particle / : May AJ, Kumar U, Acharya P

EMDB-47893:
Cryo-EM map of 2 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-47895:
Cryo-EM map of 4 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-70607:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9om5:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-47885:
Cryo-EM local map of dimerized VRC36 Fabs
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-70605:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

EMDB-70685:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

PDB-9om3:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

PDB-9op9:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

EMDB-53844:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with weakly bound effector CCG28 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-72377:
Staphylococcal Enterotoxin C in complex with NB C107 and NB C112
Method: single particle / : Hang W, Kim J, Taylor DJ, Shi Y

EMDB-49964:
Global map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemaglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-73949:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-73950:
CryoEM map of CK52.1 in complex with Q23.V033GT
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9z9l:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-73961:
CK52.1 Fab in complex with Q23.RH-GT. Env
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-53375:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (C2-symmetry)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-53346:
CryoEM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40 (focused refinement)
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-53235:
Cryo-EM structure of Arabidopsis TIR-NLR WRR4A tetramer in complex with effector CCG40
Method: single particle / : Zhao H, Lukoyanova N, Selvaraj M, Jones J

EMDB-68805:
Structure of Arabidopsis SNX1 (Class l, 7-fold)
Method: helical / : Li YB, Tao R, Zhang H, Wen XK, Leung SKP, Lau WCY, Jiang LW, Cui Y

EMDB-68806:
Structure of Arabidopsis SNX1 (Class ll, 6-fold)
Method: helical / : Li YB, Tao R, Zhang H, Wen XK, Leung SKP, Lau WCY, Jiang LW, Cui Y

EMDB-49589:
A membrane protein with cofactor determined by single-particle CryoEM
Method: single particle / : Suder DS, Gonen S

EMDB-49622:
Structure of photoactivated rhodopsin in complex with a megabody
Method: single particle / : Suder DS, Gonen S

PDB-9nnz:
Structure of rod opsin in complex with a megabody
Method: single particle / : Suder DS, Gonen S

PDB-9noz:
Structure of photoactivated rhodopsin in complex with a megabody
Method: single particle / : Suder DS, Gonen S

EMDB-53343:
Cryo-EM structure of aquaporin 3 at pH 8.0
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

EMDB-53344:
Cryo-EM structure of aquaporin 3 at pH 5.5
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

EMDB-53345:
Cryo-EM structure of aquaporin 3 at pH 8.0 with hydrogen peroxide
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

PDB-9qsx:
Cryo-EM structure of aquaporin 3 at pH 8.0
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

PDB-9qsy:
Cryo-EM structure of aquaporin 3 at pH 5.5
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

PDB-9qsz:
Cryo-EM structure of aquaporin 3 at pH 8.0 with hydrogen peroxide
Method: single particle / : Huang P, Venskutonyte R, Lindkvist-Petersson K

EMDB-47792:
Structure of full length AMPA receptor GluA2 and auxiliary subunit TARP gamma-2 in complex with anti-miR 17 oligonucleotide RGLS4326
Method: single particle / : Yen LY, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more