[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 617 items for (author: ho & mr)

EMDB-47765:
Week 26 C3V5, gp41-GH and gp41-base epitope polyclonal antibodies from participant 202 in complex with ConM SOSIP
Method: single particle / : Lin RN, Torres JL, Tran AS, Ozorowski G, Ward AB

EMDB-70288:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

EMDB-71643:
CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
Method: single particle / : Mishra BP, Ve T

EMDB-71644:
CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
Method: helical / : Mishra BP, Ve T

PDB-9pha:
CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
Method: single particle / : Mishra BP, Ve T

PDB-9phb:
CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
Method: helical / : Mishra BP, Ve T

EMDB-72108:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P, Fischer E

PDB-9q0w:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P

EMDB-54068:
SIVtal integrase in complex with RNA stem-loop (focused refinement of the filament repeat unit)
Method: single particle / : Singer MR, Cherepanov P

EMDB-54070:
CryoEM reconstruction of integrase filament at the lumen of native HIV-1 cores (box size 47.3 nm)
Method: single particle / : Cherepanov P, Singer MR, Hope J, Zhang P

EMDB-54071:
CryoEM reconstruction of integrase filament at the lumen of native HIV-1 cores (box size 34.2 nm)
Method: single particle / : Cherepanov P, Singer MR, Hope J, Zhang P

EMDB-53547:
Norovirus NS3 hexamer in complex with ATP-gamma-S
Method: single particle / : Haas M, Drulyte I, Hurdiss DL

EMDB-51464:
CryoEM structure of mammalian AAP in complex with acetyl-alanyl-chloromethylketone
Method: single particle / : Kiss-Szeman AJ, Jakli I, Hosogi N, Banoczi Z, Harmat V, Memyhard DK, Perczel A

EMDB-51501:
Cryo-EM structure of acylaminoacyl-peptidase in complex with dichlorvos
Method: single particle / : Kiss-Szeman AJ, Traore D, Jakli I, Harmat V, Menyhard DK, Perczel A

EMDB-52489:
Cryo-EM structure of acylaminoacyl peptidase (AAP) in covalent complex with inhibitor AEBSF
Method: single particle / : Kiss-Szeman AJ, Menyhard DK, Harmat V, Perczel A

PDB-9gne:
CryoEM structure of mammalian AAP in complex with acetyl-alanyl-chloromethylketone
Method: single particle / : Kiss-Szeman AJ, Jakli I, Hosogi N, Banoczi Z, Harmat V, Memyhard DK, Perczel A

PDB-9gou:
Cryo-EM structure of acylaminoacyl-peptidase in complex with dichlorvos
Method: single particle / : Kiss-Szeman AJ, Traore D, Jakli I, Harmat V, Menyhard DK, Perczel A

PDB-9hxq:
Cryo-EM structure of acylaminoacyl peptidase (AAP) in covalent complex with inhibitor AEBSF
Method: single particle / : Kiss-Szeman AJ, Menyhard DK, Harmat V, Perczel A

EMDB-48922:
Endogenous Pfs230D13-14 in complex with Pfs48/45 bound to anti-Pfs48/45 Fabs RUPA-71 and RUPA-44
Method: single particle / : Hailemariam S, Heide F, Bekkering E, Ivanochko D, Yoo R, Julien JP

EMDB-48921:
Endogenous Pfs230D1-6 in complex with RUPA-97, LMIV230-01, and 2A2 Fab domains
Method: single particle / : Heide F, Yoo R, Ivanochko D, Hailemariam S, Bekkering E, Julien JP

EMDB-48924:
Endogenous Pfs230D9-14 in complex with Pfs48/45
Method: single particle / : Heide F, Ivanochko D, Bekkering E, Yoo R, Hailemariam S, Julien JP

EMDB-48941:
Endogenous Pfs230D7-8 in complex with 18F25
Method: single particle / : Jackman JJ, Yoo R, Ivanochko D, Hailemariam S, Bekkering E, Julien JP

EMDB-70808:
Structure of Fab HB420 in complex with influenza H3N2 A/Moscow/10/1999 neuraminidase
Method: single particle / : Lv H, Wu NC

EMDB-46727:
Structure of AG11-2F01 Fab in complex with A/Solomon Islands/3/2006 (H1N1) influenza virus hemagglutinin
Method: single particle / : Mou Z, Lei R, Dai X, Wu N

EMDB-72209:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-72215:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449; G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-45930:
Structure of 16.ND.92 Fab in complex with A/Solomon Islands/3/2006(H1N1) influenza virus Hemagglutinin
Method: single particle / : Ouyang WO, Pholcharee T, Wu NC

EMDB-47929:
Human LARP1 bound to the 40S small ribosomal subunit
Method: single particle / : Dong W, Kaufhold R, Brito Querido J

EMDB-51514:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51515:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51516:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqy:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqz:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gr0:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-44672:
GI.1 DS1 virus-like particle
Method: single particle / : Olia AS, Verardi R, Gorman J, Kwong PD

EMDB-43409:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43778:
Structure of HflX mediated, inactive Mycobacterium smegmatis 50S ribosomal subunit
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43791:
Mycobacterium smegmatis 70S ribosome bound to P-tRNA
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-44044:
Pre-dissociated Mycobacterium smegmatis 50S ribosomal subunit-HflX-GMPPCP complex
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-47104:
CryoEM Structure of Human BTN2A1 ectodomain in complex with TCR-blocking 2A1.12 Fab
Method: single particle / : Ramesh A, Fuller JR, Roy S, Adams E

PDB-9dpe:
CryoEM Structure of Human BTN2A1 ectodomain in complex with TCR-blocking 2A1.12 Fab
Method: single particle / : Ramesh A, Fuller JR, Roy S, Adams E

EMDB-44673:
Norovirus GI.1 VLP bound to 16E10 Fab
Method: single particle / : Olia AS, Kwong PD

EMDB-44734:
16E10 Fab bound to norovirus GI.1 P domain
Method: single particle / : Olia AS, Morano NC, Shapiro L, Kwong PD

PDB-9bof:
16E10 Fab bound to norovirus GI.1 P domain
Method: single particle / : Olia AS, Morano NC, Shapiro L, Kwong PD

EMDB-44181:
Filament of D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44182:
Filament of D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44183:
Filament of D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44184:
Filament of Tau in complex with D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44185:
Filament of Tau in complex with D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44186:
Filament of Tau in complex with D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more