[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 67 items for (author: hess & m)

EMDB-56129:
Octameric C. elegans BORC, containing BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and the shared BORC and BLoC-1 subunits, BLOC1S1, BLOC1S2 and Snapin
Method: single particle / : Amann SJ, de Araujo MEG, Grishkovskaya I, Huber LA, Haselbach D

EMDB-43409:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43778:
Structure of HflX mediated, inactive Mycobacterium smegmatis 50S ribosomal subunit
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43791:
Mycobacterium smegmatis 70S ribosome bound to P-tRNA
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-44044:
Pre-dissociated Mycobacterium smegmatis 50S ribosomal subunit-HflX-GMPPCP complex
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8vpk:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43229:
Phosphate-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Method: single particle / : Hessefort LZ, Williams DR, Biegasiewicz KF

PDB-8vgx:
Phosphate-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Method: single particle / : Hessefort LZ, Williams DR, Biegasiewicz KF

EMDB-43267:
Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43294:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43305:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43317:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43333:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43476:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43477:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-Clm
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-43484:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8vio:
Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8vk0:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8vk7:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8vki:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8vkw:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8vr4:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8vr8:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-Clm
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8vrl:
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
Method: single particle / : Majumdar S, Koripella RK, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-19396:
FAdV-C4 Aviadenovirus structure, strain AG234
Method: single particle / : Perez-Illana MP, Schachnner A, Condezo GN, Hernando-Perez M, Martinez M, Marabini R, Hess M, San Martin C

EMDB-19401:
FAdV-C4 Aviadenovirus structure, strain KR5
Method: single particle / : Perez-Illana MP, Schachnner A, Condezo GN, Hernando-Perez M, Martinez M, Marabini R, Hess M, San Martin C

PDB-8roq:
FAdV-C4 Aviadenovirus structure, strain KR5
Method: single particle / : Perez-Illana MP, Schachnner A, Condezo GN, Hernando-Perez M, Martinez M, Marabini R, Hess M, San Martin C

EMDB-43230:
Vanadate-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Method: single particle / : Hessefort LZ, Williams DR, Biegasiewicz KF

EMDB-43270:
Hydrogen Peroxide-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Method: single particle / : Hessefort LZ, Williams DR, Biegasiewicz KF

EMDB-43291:
Bromide-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Method: single particle / : Hessefort LZ, Williams DR, Biegasiewicz KF

PDB-8vh0:
Vanadate-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Method: single particle / : Hessefort LZ, Williams DR, Biegasiewicz KF

PDB-8vix:
Hydrogen Peroxide-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Method: single particle / : Hessefort LZ, Williams DR, Biegasiewicz KF

PDB-8vjq:
Bromide-bound Vanadium-dependent Bromoperoxidase from Corallina pilulifera
Method: single particle / : Hessefort LZ, Williams DR, Biegasiewicz KF

EMDB-17582:
Cryo-EM structure of Caenorhabditis elegans DPF-3 (apo)
Method: single particle / : Gudipati RK, Cavadini S, Kempf G, Grosshans H

PDB-8pba:
Cryo-EM structure of Caenorhabditis elegans DPF-3 (apo)
Method: single particle / : Gudipati RK, Cavadini S, Kempf G, Grosshans H

EMDB-29783:
Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer with LMHS mutations in complex with 8ANC195 and 10-1074
Method: single particle / : Chen Y, Zhou F, Huang R, Tolbert W, Pazgier M

EMDB-41613:
Cryo-EM structure of BG505 SOSIP.664 HIV-1 Env trimer in complex with temsavir, 8ANC195, and 10-1074
Method: single particle / : Tolbert WD, Pozharski E, Pazgier M

PDB-8g6u:
Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer with LMHS mutations in complex with 8ANC195 and 10-1074
Method: single particle / : Chen Y, Zhou F, Huang R, Tolbert W, Pazgier M

PDB-8ttw:
Cryo-EM structure of BG505 SOSIP.664 HIV-1 Env trimer in complex with temsavir, 8ANC195, and 10-1074
Method: single particle / : Tolbert WD, Pozharski E, Pazgier M

EMDB-28378:
Structure of the C3bB proconvertase in complex with lufaxin and factor Xa
Method: single particle / : Andersen JF, Lei H

PDB-8eok:
Structure of the C3bB proconvertase in complex with lufaxin and factor Xa
Method: single particle / : Andersen JF, Lei H

EMDB-28279:
Structure of the C3bB proconvertase in complex with lufaxin
Method: single particle / : Andersen JF, Lei H

PDB-8enu:
Structure of the C3bB proconvertase in complex with lufaxin
Method: single particle / : Andersen JF, Lei H

EMDB-27596:
Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer in complex with 8ANC195 and 10-1074
Method: single particle / : Chen Y, Zhou F, Huang R, Tolbert W, Pazgier M

PDB-8dok:
Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer in complex with 8ANC195 and 10-1074
Method: single particle / : Chen Y, Zhou F, Huang R, Tolbert W, Pazgier M

EMDB-27103:
Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer with LMHS mutations in complex with Temsavir, 8ANC195, and 10-1074
Method: single particle / : Chen Y, Pozharski E, Tolbert W, Pazgier M

PDB-8czz:
Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer with LMHS mutations in complex with Temsavir, 8ANC195, and 10-1074
Method: single particle / : Chen Y, Pozharski E, Tolbert W, Pazgier M

EMDB-26157:
Cryo-EM structure of BG505 SOSIP HIV-1 Env trimer in complex with CD4 receptor (D1D2) and broadly neutralizing darpin bnD.9
Method: single particle / : Cerutti G, Gorman J

PDB-7txd:
Cryo-EM structure of BG505 SOSIP HIV-1 Env trimer in complex with CD4 receptor (D1D2) and broadly neutralizing darpin bnD.9
Method: single particle / : Cerutti G, Gorman J, Kwong PD, Shapiro L

EMDB-33233:
Cryo-EM structure of EDS1 and SAG101 with ATP-APDR
Method: single particle / : Huang SJ, Jia AL, Han ZF, Chai JJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more