[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 891 items for (author: he & zz)

EMDB-71555:
Cryo-EM structure of full-length human TRPV1 in complex with analgesic MSP20
Method: single particle / : Neuberger A, Talyzina IA, Romeo I, Aiello F, Maramai S, Alcaro S, Artese A, Brizzi A, Sobolevsky AI

PDB-9pea:
Cryo-EM structure of full-length human TRPV1 in complex with analgesic MSP20
Method: single particle / : Neuberger A, Talyzina IA, Romeo I, Aiello F, Maramai S, Alcaro S, Artese A, Brizzi A, Sobolevsky AI

EMDB-70204:
Cryo-EM Structure of YfdQ Reveals a Widespread Novel Family of Bacteriophage-Associated Proteins with Shell-Like Assemblies
Method: single particle / : Guzzo CR, Araujo GG, Merighi DGS

PDB-9o7m:
Cryo-EM Structure of YfdQ Reveals a Widespread Novel Family of Bacteriophage-Associated Proteins with Shell-Like Assemblies
Method: single particle / : Guzzo CR, Araujo GG, Merighi DGS

EMDB-54627:
Local refinement of a PSI monomer of A. marina NIES-2412
Method: single particle / : Consoli G, Leong HF

EMDB-54956:
Trimeric photosystem I of Acaryochloris marina NIES-2412
Method: single particle / : Leong HF, Consoli G

PDB-9s6p:
Local refinement of a PSI monomer of A. marina NIES-2412
Method: single particle / : Consoli G, Leong HF

PDB-9sk3:
Trimeric photosystem I of Acaryochloris marina NIES-2412
Method: single particle / : Leong HF, Consoli G

EMDB-58529:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-N-terminal monoclonal antibody
Method: single particle / : Lau RJ, Wu GHY, Barritt JD, Huemer CB, Matthews S

EMDB-58555:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

PDB-31mr:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

EMDB-72934:
HCoV-HKU1 C S 2P in complex with H501-008 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72935:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 1, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72936:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 2, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72937:
HCoV-HKU1 C S 2P in complex with H501-018 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72938:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72939:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygn:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 1, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygo:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 2, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygp:
HCoV-HKU1 C S 2P in complex with H501-018 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygq:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygr:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-55593:
Chlorophyll f-containing dimeric far-red Photosystem II from Chroococcidiopsis thermalis PCC 7203
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

EMDB-55594:
Chlorophyll f-containing monomeric far-red Photosystem II from Calothrix sp. NIES-3974
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

PDB-9t5t:
Chlorophyll f-containing dimeric far-red Photosystem II from Chroococcidiopsis thermalis PCC 7203
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

PDB-9t5u:
Chlorophyll f-containing monomeric far-red Photosystem II from Calothrix sp. NIES-3974
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

EMDB-71823:
Cryo-EM structure of NCLX without calcium (class 2)
Method: single particle / : Zhang J, Feng L

PDB-9ps5:
Cryo-EM structure of NCLX without calcium (class 2)
Method: single particle / : Zhang J, Feng L

EMDB-66262:
Cryo-EM structure of loop truncated self-sufficient P450 from Shimazuella soli
Method: single particle / : Xie ZZ, Li SY, Liu ZW, Li QR, Huang JW, Chen CC, Guo RT

EMDB-66257:
Cryo-EM structure of full-length self-sufficient P450 from Shimazuella soli
Method: single particle / : Xie ZZ, Li SY, Liu ZW, Li QR, Huang JW, Chen CC, Guo RT

EMDB-66267:
Cryo-EM structure of full-length self-sufficient P450 in complex with NADPH from Shimazuella soli
Method: single particle / : Xie ZZ, Li SY, Liu ZW, Li QR, Huang JW, Chen CC, Guo RT

EMDB-66258:
Cryo-EM structure of one-heme-missing self-sufficient P450 from Shimazuella soli
Method: single particle / : Xie ZZ, Li SY, Liu ZW, Li QR, Huang JW, Chen CC, Guo RT

EMDB-55389:
Human carboxyhemoglobin bound to full-length Staphylococcus aureus IsdH - IsdH:Hbdim complex
Method: single particle / : Buoli Comani V, De Bei O, Luisi BF, Bettati S

PDB-9szw:
Human carboxyhemoglobin bound to full-length Staphylococcus aureus IsdH - IsdH:Hbdim complex
Method: single particle / : Buoli Comani V, De Bei O, Luisi BF, Bettati S

EMDB-62782:
Cryo-electron microscopic structure of a novel amidohydrolase ADH3 triple mutation
Method: single particle / : Dai LH, He BY, Hu YM, Xu YH, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-55478:
Human carboxyhemoglobin bound to full-length Staphylococcus aureus IsdH - 1IsdH:2Hbdim complex
Method: single particle / : Buoli Comani V, De Bei O, Luisi BF, Bettati S

EMDB-75840:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

PDB-11mr:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

EMDB-62778:
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62780:
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62861:
Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, He BY, Huang JP, Xie ZZ, Li H, Guo RT, Chen CC

EMDB-64402:
Cryo-EM strucutre of CXCR4 complexed with agonist SDV1a
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-64403:
Cryo-EM structure of CXCR4 complexed with agonist SDVX1
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

PDB-9upu:
Cryo-EM strucutre of CXCR4 complexed with agonist SDV1a
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

PDB-9upv:
Cryo-EM structure of CXCR4 complexed with agonist SDVX1
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-49997:
DHIK wk12 + Rhesus Macaque polyFab
Method: single particle / : Lin RN, Ward AB

EMDB-75038:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

PDB-10ay:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

EMDB-56468:
Structure of the type IV pilus machinery from Thermus thermophilus in the open state (C13 symmetry)
Method: subtomogram averaging / : McLaren MJ, Neuhaus A, Gold VAM

EMDB-56469:
Structure of the type IV pilus machinery from Thermus thermophilus in the open state (C6 symmetry)
Method: subtomogram averaging / : McLaren MJ, Neuhaus A, Gold VAM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more