[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 56 items for (author: haque & as)

EMDB-53279:
Cryo_EM density map of human FAN1 in complex with CAG-2 loop DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Thomsen M

EMDB-19960:
Sulfolobus acidocaldarius AAP filament
Method: helical / : Daum B, Isupov MN, Gaines M, McLaren M, Mollat C

EMDB-19961:
Structure of the archaellum of Sulfolobus acidocaldarius strain MW039 (delta agl3 mutant).
Method: helical / : Daum B, Isupov MN, Gaines M, McLaren M, Mollat C

EMDB-19990:
Structure of the AAP filament of Sulfolobus acidocaldarius strain MW039 (delta agl3 mutant).
Method: helical / : Daum B, Isupov MN, Gaines M, McLaren M, Mollat C

PDB-9ets:
Sulfolobus acidocaldarius AAP filament
Method: helical / : Daum B, Isupov MN, Gaines M, McLaren M, Mollat C

PDB-9ett:
Structure of the archaellum of Sulfolobus acidocaldarius strain MW039 (delta agl3 mutant).
Method: helical / : Daum B, Isupov MN, Gaines M, McLaren M, Mollat C

PDB-9ev0:
Structure of the AAP filament of Sulfolobus acidocaldarius strain MW039 (delta agl3 mutant).
Method: helical / : Daum B, Isupov MN, Gaines M, McLaren M, Mollat C

EMDB-19844:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

EMDB-19850:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

EMDB-51680:
Cryo_EM structure of human FAN1 R507H mutant in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

PDB-9eo1:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

PDB-9eoa:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

PDB-9gy0:
Cryo_EM structure of human FAN1 R507H mutant in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

EMDB-19607:
MutSbeta-ATPgS with kinked MSH2 clamp
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8rz9:
MutSbeta-ATPgS with kinked MSH2 clamp
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-19606:
MutSbeta-ATPgS with straight MSH2 clamp
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8rz8:
MutSbeta-ATPgS with straight MSH2 clamp
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-19605:
(CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8rz7:
(CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-18700:
Sulfolobus acidocaldarius Archaellum filament.
Method: helical / : Isupov MN, Gaines M, McLaren M, Daum B

PDB-8qx4:
Sulfolobus acidocaldarius Archaellum filament.
Method: helical / : Isupov MN, Gaines M, McLaren M, Daum B

EMDB-18992:
MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form
Method: single particle / : Haque T, Brace G, Felsenfeld D, Tilack K, Schaertl S, Ballantyne G, Maillard M, Iyer R, Prasad B, Thomsen M, Wilkionson H, Plotnikov N, Ritzefeld M

PDB-8r7v:
MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form
Method: single particle / : Haque T, Brace G, Felsenfeld D, Tilack K, Schaertl S, Ballantyne G, Maillard M, Iyer R, Prasad B, Thomsen M, Wilkionson H, Plotnikov N, Ritzefeld M

EMDB-19608:
Sulfolobus acidocaldarius threads (0406) filament.
Method: helical / : Isupov MN, Gaines M, McLaren M, Daum B

PDB-8rzl:
Sulfolobus acidocaldarius threads (0406) filament.
Method: helical / : Isupov MN, Gaines M, McLaren M, Daum B

EMDB-18119:
Sulfolobus acidocaldarius AAP filament.
Method: helical / : Isupov MN, Gaines M, Daum B, McLaren M

PDB-8q30:
Sulfolobus acidocaldarius AAP filament.
Method: helical / : Isupov MN, Gaines M, Daum B, McLaren M

EMDB-16972:
MutSbeta bound to 61bp homoduplex DNA
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8oma:
MutSbeta bound to 61bp homoduplex DNA
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-16964:
MutSbeta bound to (CAG)2 DNA (canonical form)
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8olx:
MutSbeta bound to (CAG)2 DNA (canonical form)
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-16971:
MutSbeta bound to (CAG)2 DNA (open form)
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8om9:
MutSbeta bound to (CAG)2 DNA (open form)
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-16973:
DNA-unbound MutSbeta-ATP complex (bent clamp form)
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8omo:
DNA-unbound MutSbeta-ATP complex (bent clamp form)
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-16974:
DNA-unbound MutSbeta-ATP complex (straight clamp form)
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8omq:
DNA-unbound MutSbeta-ATP complex (straight clamp form)
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-16975:
MutSbeta bound to homoduplex plasmid DNA
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-16969:
DNA-free open form of MutSbeta
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8om5:
DNA-free open form of MutSbeta
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

EMDB-13546:
Sulfolobus acidocaldarius 0406 filament.
Method: helical / : Isupov MN, Gaines M

PDB-7pnb:
Sulfolobus acidocaldarius 0406 filament.
Method: helical / : Isupov MN, Gaines M, Daum B

EMDB-23311:
Synechocystis sp. UTEX2470 Cyanophycin synthetase 1 with ATP
Method: single particle / : Sharon I, Schmeing TM

EMDB-23325:
Cyanophycin synthetase 1 from Synechocystis sp. UTEX2470 with ADPCP and 8x(Asp-Arg)-NH2
Method: single particle / : Sharon I, Grogg M

EMDB-23326:
Cyanophycin synthetase 1 from Synechocystis sp. UTEX2470 with ATP and 16x(Asp-Arg)
Method: single particle / : Sharon I, Grogg M, Hilvert D, Schmeing TM

EMDB-23327:
Cyanophycin synthetase from A. baylyi DSM587 with ATP
Method: single particle / : Sharon I, Haque AS, Lahiri I, Leschziner A, Schmeing TM

EMDB-23328:
Cyanophycin synthetase 1 from Synechocystis sp. UTEX2470 with ATP and 8x(Asp-Arg)-Asn
Method: single particle / : Sharon I, Grogg M

PDB-7lg5:
Synechocystis sp. UTEX2470 Cyanophycin synthetase 1 with ATP
Method: single particle / : Sharon I, Schmeing TM

PDB-7lgj:
Cyanophycin synthetase 1 from Synechocystis sp. UTEX2470 with ADPCP and 8x(Asp-Arg)-NH2
Method: single particle / : Sharon I, Grogg M, Hilvert D, Schmeing TM

PDB-7lgm:
Cyanophycin synthetase from A. baylyi DSM587 with ATP
Method: single particle / : Sharon I, Haque AS, Lahiri I, Leschziner A, Schmeing TM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more