[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 54 items for (author: grabbe & f)

EMDB-19718:
RNA polymerase II core initially transcribing complex with an ordered RNA of 8 nt
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19719:
RNA polymerase II core initially transcribing complex with an ordered RNA of 10 nt
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19720:
RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state b (composite structure)
Method: single particle / : Zhan Y, Grabber F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19726:
RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state a (composite structure)
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

PDB-8s51:
RNA polymerase II core initially transcribing complex with an ordered RNA of 8 nt
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

PDB-8s52:
RNA polymerase II core initially transcribing complex with an ordered RNA of 10 nt
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

PDB-8s54:
RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state b (composite structure)
Method: single particle / : Zhan Y, Grabber F, Oberbeckmann E, Dienemann C, Cramer P

PDB-8s55:
RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state a (composite structure)
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19721:
RNA polymerase II initially transcribing complex with an ordered RNA of 8 nt
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19722:
RNA polymerase II initially transcribing complex with an ordered RNA of 10 nt
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19723:
RNA polymerase II initially transcribing complex with an ordered RNA of 12 nt
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19724:
RNA polymerase II early elongation complex bound to TFIIE, TFIIF and TFIIH - state a
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19725:
RNA polymerase II early elongation complex bound to TFIIE, TFIIF and TFIIH - state b
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19743:
RNA polymerase II core initially transcribing complex with an ordered RNA of 12 nt
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19795:
RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state a (global map)
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19796:
RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state b (global map)
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-19797:
EC14 core Pol II focused map
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

PDB-8s5n:
RNA polymerase II core initially transcribing complex with an ordered RNA of 12 nt
Method: single particle / : Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P

EMDB-16274:
RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16331:
RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16335:
RNA polymerase II core pre-initiation complex with the proximal +1 nucleosome (cPIC-Nuc10W)
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16336:
RNA polymerase II core pre-initiation complex focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16337:
Proximal +1 nucleosome focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16338:
RNA polymerase II core pre-initiation complex with the proximal +1 nucleosome composite map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16339:
RNA polymerase II core pre-initiation complex focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16340:
Proximal +1 nucleosome focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16341:
TFIIH subcomplex CDK-activating kinase module focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16342:
General transcription factor IIH in closed conformation focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16343:
RNA polymerase II pre-initiation complex with the proximal +1 nucleosome composite map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16365:
RNA polymerase II core pre-initiation complex focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16366:
Distal +1 nucleosome focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16367:
General transcription factor IIH in open conformation focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16368:
TFIIH subcomplex CDK-activating kinase module focused map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-16369:
RNA polymerase II pre-initiation complex with the distal +1 nucleosome composite map
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

PDB-8bvw:
RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

PDB-8byq:
RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

PDB-8bz1:
RNA polymerase II core pre-initiation complex with the proximal +1 nucleosome (cPIC-Nuc10W)
Method: single particle / : Abril-Garrido J, Dienemann C, Grabbe F, Velychko T, Lidschreiber M, Wang H, Cramer P

EMDB-12719:
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble
Method: single particle / : Schilbach S, Aibara S

EMDB-12720:
Yeast RNA polymerase II transcription pre-initiation complex (consensus)
Method: single particle / : Schilbach S, Aibara S

EMDB-12721:
Yeast TFIIH in the contracted state within the pre-initiation complex
Method: single particle / : Schilbach S, Aibara S

EMDB-12722:
Yeast TFIIH in the expanded state within the pre-initiation complex
Method: single particle / : Schilbach S, Aibara S

EMDB-12723:
Focused refinement of the upstream complex region of a RNA polymerase II transcription pre-initiation assembly
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12724:
Focused refinement of RNA polymerase II (10-subunit) - TFIIB - TFIIF region of a transcription pre-initiation assembly
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12725:
Focused refinement of RNA polymerase II (10-subunit) - TFIIB region of a transcription pre-initiation assembly
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12743:
Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA
Method: single particle / : Schilbach S, Aibara S

EMDB-12744:
Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA
Method: single particle / : Schilbach S, Aibara S

EMDB-12745:
Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA
Method: single particle / : Schilbach S, Aibara S

PDB-7o4i:
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

PDB-7o4j:
Yeast RNA polymerase II transcription pre-initiation complex (consensus)
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

PDB-7o4k:
Yeast TFIIH in the contracted state within the pre-initiation complex
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more