[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 87 items for (author: glenn & j)

EMDB-44380:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

PDB-9b9e:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-44945:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking local map
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-44946:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking, local refinement of heterotrimer
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-44961:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking global map
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-46828:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

EMDB-47992:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

PDB-9dgi:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

PDB-9ego:
Cannabinoid receptor 1-Gi complex with novel ligand
Method: single particle / : Tummino TA, Iliopoulos-Tsoutsouvas C, Braz JM, O'Brien ES, Krishna Kumar K, Makriyannis M, Basbaum AI, Shoichet BK

EMDB-41072:
Human leukocyte antigen bound by two alloreactive antibody Fabs
Method: single particle / : Kizziah JL, Killian JT, Diaz-Avalos R, Qiu S, Yang G, Green T, Lund FE

PDB-8t6m:
Human leukocyte antigen bound by two alloreactive antibody Fabs
Method: single particle / : Kizziah JL, Killian JT, Diaz-Avalos R, Qiu S, Yang G, Green T, Lund FE

EMDB-45127:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '6218
Method: single particle / : Wu C, Skiniotis G

EMDB-45156:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-45792:
Constituent EM map: focused refinement of the Venus flytrap (VFT) and cysteine-rich (CRD) domains of the calcium-sensing receptor.
Method: single particle / : Wu C, Skiniotis G

EMDB-45795:
Focused refinement of the Heptahelical transmembrane (7TM) domain of the calcium-sensing receptor
Method: single particle / : Wu C, Skiniotis G

EMDB-45804:
Raw Consensus map of the Calcium-Sensing Receptor in complex with positive allosteric modulator '6218
Method: single particle / : Wu C, Skiniotis G

EMDB-45882:
Raw Consensus map of the Calcium-Sensing Receptor in complex with positive allosteric modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-45901:
Focused refinement of the Heptahelical transmembrane (7TM) domain of the calcium-sensing receptor bound to positive modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-45902:
Focused refinement of the Venus flytrap domain of the calcium-sensing receptor bound to positive modulator '54149
Method: single particle / : Wu C, Skiniotis G

PDB-9c1p:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '6218
Method: single particle / : Wu C, Skiniotis G

PDB-9c2f:
Structure of Calcium-Sensing Receptor in complex with positive allosteric modulator '54149
Method: single particle / : Wu C, Skiniotis G

EMDB-42676:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

EMDB-42999:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

PDB-8uwl:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

PDB-8v6u:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-41699:
The consensus map of E. coli ExoVII(H238A)
Method: single particle / : Liu C, Berger JM

EMDB-41700:
Head map of E. coli ExoVII (H238A)
Method: single particle / : Liu C, Berger JM

EMDB-41701:
The tail map of E. coli ExoVII(H238A)
Method: single particle / : Liu C, Berger JM

EMDB-41702:
The half complex of E. coli ExoVII(H238A)
Method: single particle / : Liu C, Berger JM

EMDB-41704:
E. coli ExoVII(H238A)
Method: single particle / : Liu C, Berger JM

PDB-8txr:
E. coli ExoVII(H238A)
Method: single particle / : Liu C, Berger JM

EMDB-27488:
Cryo-EM structure of cystinosin in a cytosol-open state
Method: single particle / : Schmiege P, Li X

EMDB-27489:
Cryo-EM structure of cystinosin in a lumen-open state
Method: single particle / : Schmiege P, Li X

EMDB-27490:
Cryo-EM structure of cystine-bound cystinosin in a lumen-open state
Method: single particle / : Schmiege P, Li X

EMDB-27492:
Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH5.0
Method: single particle / : Schmiege P, Li X

EMDB-27493:
Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH7.5
Method: single particle / : Schmiege P, Li X

PDB-8dke:
Cryo-EM structure of cystinosin in a cytosol-open state
Method: single particle / : Schmiege P, Li X

PDB-8dki:
Cryo-EM structure of cystinosin in a lumen-open state
Method: single particle / : Schmiege P, Li X

PDB-8dkm:
Cryo-EM structure of cystine-bound cystinosin in a lumen-open state
Method: single particle / : Schmiege P, Li X

PDB-8dkw:
Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH5.0
Method: single particle / : Schmiege P, Li X

PDB-8dkx:
Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH7.5
Method: single particle / : Schmiege P, Li X

EMDB-13097:
human DEPTOR in a complex with mutant human mTORC1 A1459P
Method: single particle / : Heimhalt M, Berndt A

PDB-7owg:
human DEPTOR in a complex with mutant human mTORC1 A1459P
Method: single particle / : Heimhalt M, Berndt A, Wagstaff J, Anandapadamanaban M, Perisic O, Maslen S, McLaughlin S, Yu WH, Masson GR, Boland A, Ni X, Yamashita K, Murshudov GN, Skehel M, Freund SM, Williams RL

EMDB-23339:
Cryo-EM map of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapG in the first conformation
Method: single particle / : Du M, Yuan Z

EMDB-23340:
Cryo-EM map of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapG in the second conformation
Method: single particle / : Du M, Yuan Z

EMDB-23341:
Cryo-EM map of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapF-PapG
Method: single particle / : Du M, Yuan Z

PDB-7lhg:
Cryo-EM structure of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapG in the first conformation
Method: single particle / : Du M, Yuan Z, Werneburg G, Henderson N, Chauhan H, Kovach A, Zhao G, Johl J, Li H, Thanassi D

PDB-7lhh:
Cryo-EM structure of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapG in the second conformation
Method: single particle / : Du M, Yuan Z, Werneburg G, Henderson N, Chauhan H, Kovach A, Zhao G, Johl J, Li H, Thanassi D

PDB-7lhi:
Cryo-EM structure of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapF-PapG
Method: single particle / : Du M, Yuan Z, Werneburg G, Henderson N, Chauhan H, Kovach A, Zhao G, Johl J, Li H, Thanassi D

EMDB-11069:
Smooth muscle myosin shutdown state heads region
Method: single particle / : Scarff CA, Carrington G, Casas Mao D, Chalovich JM, Knight PJ, Ranson NA, Peckham M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more