[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 40 items for (author: ghirlando & r)

EMDB-49565:
E. coli Cir in Complex with the RBD of Microcin V
Method: single particle / : Maurakis SA, Botos I, Buchanan SK

PDB-9nn6:
E. coli Cir in Complex with the RBD of Microcin V
Method: single particle / : Maurakis SA, Botos I, Buchanan SK

EMDB-46582:
Cryo-electron microscopy structure of TnsE-A453V/D523N bound to 3'-recessed DNA
Method: single particle / : Krishnan SS, Guarne A

EMDB-46776:
E. coli TolAQR conformation I
Method: single particle / : Celia H, Botos I

EMDB-46777:
E. coli TolAQR conformation II
Method: single particle / : Celia H, Botos I

EMDB-46778:
E. coli TonB-ExbBD TonB bound to ExbB chain C
Method: single particle / : Celia H, Botos I

EMDB-46779:
E. coli TonB-ExbBD TonB bound to ExbB chain E
Method: single particle / : Celia H, Botos I

EMDB-46780:
E. coli TonB-ExbBD TonB bound to ExbB chain A
Method: single particle / : Celia H, Botos I

EMDB-70142:
E. coli TolAQR
Method: single particle / : Celia H, Botos I

PDB-9ddm:
E. coli TolAQR conformation I
Method: single particle / : Celia H, Botos I

PDB-9ddn:
E. coli TolAQR conformation II
Method: single particle / : Celia H, Botos I

PDB-9ddo:
E. coli TonB-ExbBD TonB bound to ExbB chain C
Method: single particle / : Celia H, Botos I

PDB-9ddp:
E. coli TonB-ExbBD TonB bound to ExbB chain E
Method: single particle / : Celia H, Botos I

PDB-9ddq:
E. coli TonB-ExbBD TonB bound to ExbB chain A
Method: single particle / : Celia H, Botos I

EMDB-45082:
piggyBat transposase protein-DNA complex
Method: single particle / : Lannes L, Hickman AB, Dyda F

PDB-9c0f:
piggyBat transposase protein-DNA complex
Method: single particle / : Lannes L, Hickman AB, Dyda F

EMDB-43705:
HIV-1 wild-type intasome core
Method: single particle / : Li M, Craigie R

EMDB-43756:
HIV-1 P5-IN intasome core
Method: single particle / : Li M, Craigie R

EMDB-43761:
HIV-1 intasome core assembled with wild-type integrase, 1F
Method: single particle / : Li M, Craigie R

PDB-8w09:
HIV-1 wild-type intasome core
Method: single particle / : Li M, Craigie R

PDB-8w2r:
HIV-1 P5-IN intasome core
Method: single particle / : Li M, Craigie R

PDB-8w34:
HIV-1 intasome core assembled with wild-type integrase, 1F
Method: single particle / : Li M, Craigie R

EMDB-22683:
Cryo-EM structure of a chromatosome containing human linker histone H1.0
Method: single particle / : Zhou BR, Bai Y

EMDB-22684:
Cryo-EM structure of a chromatosome containing human linker histone H1.4
Method: single particle / : Zhou BR, Bai Y

EMDB-22685:
Cryo-EM structure of a chromatosome containing human linker histone H1.10
Method: single particle / : Zhou BR, Bai Y

EMDB-22686:
Cryo-EM structure of 197bp nucleosome aided by scFv
Method: single particle / : Zhou BR, Bai Y

EMDB-22687:
Cryo-EM structure of a chromatosome containing chimeric linker histone gH1.10-ncH1.4
Method: single particle / : Zhou BR, Bai Y

EMDB-22688:
cryo-EM map of di-chromatosome containing H1.4
Method: single particle / : Zhou BR, Bai Y

PDB-7k5x:
Cryo-EM structure of a chromatosome containing human linker histone H1.0
Method: single particle / : Zhou BR, Bai Y

PDB-7k5y:
Cryo-EM structure of a chromatosome containing human linker histone H1.4
Method: single particle / : Zhou BR, Bai Y

PDB-7k60:
Cryo-EM structure of a chromatosome containing human linker histone H1.10
Method: single particle / : Zhou BR, Bai Y

PDB-7k61:
Cryo-EM structure of 197bp nucleosome aided by scFv
Method: single particle / : Zhou BR, Bai Y

PDB-7k63:
Cryo-EM structure of a chromatosome containing chimeric linker histone gH1.10-ncH1.4
Method: single particle / : Zhou BR, Bai Y

EMDB-20659:
Cryo-EM structure of E. coli LonA S679A
Method: single particle / : Botos I, Lountos GT

EMDB-20667:
Biochemical and structural analysis of the Neurofibromin (NF1) protein reveals high-affinity dimer formation
Method: single particle / : Juneja P, Sherekar M, Esposito D, Han SW, Ghirlando R, Messing S, Drew M, Niel OH, Stanley C, Bhowmik D, Ramanathan A, Subramaniam S, Nissley D, Gillette W, McCormick F

EMDB-7293:
Cryo-EM structure of CENP-A nucleosome in complex with kinetochore protein CENP-N
Method: single particle / : Chittori S, Hong J

PDB-6buz:
Cryo-EM structure of CENP-A nucleosome in complex with kinetochore protein CENP-N
Method: single particle / : Chittori S, Hong J, Kelly AE, Bai Y, Subramaniam S

EMDB-8481:
Structure of tetrameric HIV-1 Strand Transfer Complex Intasome
Method: single particle / : Lyumkis D, Passos D

EMDB-8483:
Structure of higher-order HIV-1 strand transfer complex intasome
Method: single particle / : Lyumkis D, Passos D

PDB-5u1c:
Structure of tetrameric HIV-1 Strand Transfer Complex Intasome
Method: single particle / : Lyumkis D, Passos D

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more