[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 285 items for (author: fromm & s)

EMDB-43997:
Structure of a Ric1-Rgp1-Rab6 activation intermediate
Method: single particle / : Feathers JR, Fromme JC

PDB-9ayr:
Structure of a Ric1-Rgp1-Rab6 activation intermediate
Method: single particle / : Feathers JR, Fromme JC

EMDB-42603:
Human p97/VCP structure with a triazole inhibitor (NSC799462/hexamer)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-42625:
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC804515)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-42626:
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC819701/up)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-42627:
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC819701/down)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-44748:
Human p97/VCP structure with a triazole inhibitor (NSC799462/dodecamer)
Method: single particle / : Nandi P, DeVore K, Chiu PL

PDB-8uv2:
Human p97/VCP structure with a triazole inhibitor (NSC799462/hexamer)
Method: single particle / : Nandi P, DeVore K, Chiu PL

PDB-8uvo:
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC804515)
Method: single particle / : Nandi P, DeVore K, Chiu PL

PDB-8uvp:
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC819701/up)
Method: single particle / : Nandi P, DeVore K, Chiu PL

PDB-8uvq:
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC819701/down)
Method: single particle / : Nandi P, DeVore K, Chiu PL

PDB-9boq:
Human p97/VCP structure with a triazole inhibitor (NSC799462/dodecamer)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-42135:
CryoEM structure of Sec7 autoinhibited conformation
Method: single particle / : Brownfield BA, Fromme JC

EMDB-42182:
Focused map of Sec7 monomer autoinhibited conformation
Method: single particle / : Brownfield BA, Fromme JC

EMDB-42183:
Consensus map of Sec7 dimer autoinhibited conformation
Method: single particle / : Brownfield BA, Fromme JC

PDB-8ucq:
CryoEM structure of Sec7 autoinhibited conformation
Method: single particle / : Brownfield BA, Fromme JC

EMDB-15411:
Single particle structure of Atg18-WT
Method: single particle / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

PDB-8afx:
Single particle structure of Atg18-WT
Method: single particle / : Mann D, Fromm S, Martinez-Sanchez A, Gopaldass N, Mayer A, Sachse C

EMDB-17957:
Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

PDB-8pv8:
Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17969:
Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17970:
Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

PDB-8pvk:
Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

PDB-8pvl:
Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17879:
Chaetomium thermophilum Rix1-complex
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17880:
Chaetomium thermophilum low-resolution Rixosome
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17881:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - 5S RNP/Rsa4-E117D
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17882:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - Foot
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17883:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - H68/H69
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17884:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - Mrt4/uL11
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17885:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - UTP30-ITS2
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17886:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - consensus refinement
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17887:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - 5S RNP/Rsa4-E117D
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17888:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - Foot
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17889:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - uL1 stalk
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17890:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - Sda1-Ipi1
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17891:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - (Rix1)2-(Ipi3)2
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17892:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - consensus refinement
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17893:
Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - local refinement - CP
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17894:
Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - local refinement - uL1 stalk
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17895:
Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - local refinement - (Rix1)2-(Ipi3)2
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17896:
Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - local refinement - Foot
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17897:
Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - local refinement - uL1-Nop53N
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17898:
Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - consensus refinement
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17899:
Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - local refinement - CP
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17900:
Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - local refinement - uL1 stalk
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17901:
Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - local refinement - (Rix1)2-(Ipi3)2
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17902:
Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - consensus refinement
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17903:
Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - local refinement - 5S RNP/Rsa4-E117D
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17904:
Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - local refinement - uL1-Nop53N
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more