[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 936 items for (author: frank & at)

EMDB-70159:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

PDB-9o65:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

EMDB-70396:
S. griseus TUA bound UmbA4 complexes
Method: helical / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-9oee:
S. griseus TUA bound UmbA4 complexes
Method: helical / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-73973:
Streptomyces coelicolor UmbA4 complex
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Mougous JD, Veesler D

EMDB-53931:
Memory engram synapse 3D molecular architecture visualized by cryoCLEM-guided cryoET
Method: electron tomography / : Frank RAW, Lovatt CA

EMDB-49171:
Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
Method: single particle / : Yamsek M, Jha R, Keenan RJ

EMDB-72945:
Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
Method: single particle / : Yamsek M, Jha R, Keenan RJ

PDB-9n9j:
Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
Method: single particle / : Yamsek M, Jha R, Keenan RJ

PDB-9ygy:
Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
Method: single particle / : Yamsek M, Jha R, Keenan RJ

EMDB-54254:
Structure of 70S ribosome-EF-G(P610L)-GDP-Pi-apramycin complex with tRNAs in hybrid state 2 (H2- EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

PDB-9rtv:
Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-52187:
Amyloid DNA Bridging by Hfq C-terminal region
Method: helical / : Gragera M, Arluison V

EMDB-43349:
CryoEM structure of human S-OPA1 assembled on lipid membrane containing brominated cardiolipin in membrane-adjacent state
Method: helical / : Zuccaro KE, Aydin H

PDB-8vlz:
CryoEM structure of human S-OPA1 assembled on lipid membrane containing brominated cardiolipin in membrane-adjacent state
Method: helical / : Zuccaro KE, Aydin H

PDB-8vm4:
CryoEM structure of human S-OPA1 assembled on lipid membrane containing brominated cardiolipin in membrane-adjacent state
Method: helical / : Zuccaro KE, Aydin H

EMDB-54253:
Structure of 70S ribosome-EF-G(P610L)-GDP-Pi-apramycin complex with tRNAs in hybrid state 1 (H1- EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55123:
Structure of 70S ribosome-apramycin complex with tRNAs in classic state (C)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55124:
Structure of 70S ribosome-apramycin complex with tRNAs in hybrid state 1 (H1)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55125:
Structure of 70S ribosome-apramycin complex with tRNAs in hybrid state 2 (H2)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

PDB-9rtu:
Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-52215:
Structure of Trypanosoma cruzi Prolyl Oligopeptidase in the close state
Method: single particle / : Batra S, Ragan TJ, Hesketh E, Campeotto I

EMDB-52216:
Structure of Trypanosoma cruzi Prolyl Oligopeptidase in the close state
Method: single particle / : Batra S, Ragan TJ, Hesketh E, Campeotto I

PDB-9hji:
Structure of Trypanosoma cruzi Prolyl Oligopeptidase in the close state
Method: single particle / : Batra S, Ragan TJ, Hesketh E, Campeotto I

PDB-9hjj:
Structure of Trypanosoma cruzi Prolyl Oligopeptidase in the close state
Method: single particle / : Batra S, Ragan TJ, Hesketh E, Campeotto I

EMDB-53528:
Tomogram of a PSD95-containing glutamatergic synapse from 'ultra fresh' prepared mouse.
Method: electron tomography / : Peukes J, Frank R, Briggs JAG

EMDB-54246:
Subtomogram average of an ionotropic glutamate receptor within mammalian glutamatergic synapses
Method: subtomogram averaging / : Peukes J, Frank R, Briggs JAG

EMDB-70812:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 19, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Scapin G

EMDB-70813:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 36, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Scapin G

PDB-9osw:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 19, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Mader P, Sicheri F

PDB-9osy:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 36, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Mader P, Sicheri F

EMDB-48301:
CryoEM structure of ALK3-ActRIIB bound to BMP6
Method: single particle / : Goebel EJ, Saotome K, Franklin MC

EMDB-48883:
CryoEM structure of ALK2-ActRIIB bound to BMP6
Method: single particle / : Goebel EJ, Saotome K, Franklin MC

PDB-9mir:
CryoEM structure of ALK3-ActRIIB bound to BMP6
Method: single particle / : Goebel EJ, Saotome K, Franklin MC

PDB-9n4k:
CryoEM structure of ALK2-ActRIIB bound to BMP6
Method: single particle / : Goebel EJ, Saotome K, Franklin MC

EMDB-70340:
FH_302_07 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70341:
FH_302_14 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70342:
FH_302_23 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70343:
BG505 MD39.3-CC5 SOSIP in complex with V1V3 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70344:
BG505 MD39.3-CC5 SOSIP in complex with gp41-base epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70345:
BG505 MD39.3-CC5 SOSIP in complex with C3V5 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-48672:
Consensus map of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

EMDB-48669:
Focused map of Pfs230 domains 1-8 of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

EMDB-48670:
Focused map of Pfs230 (domains 9-14) and Pfs48/45 of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

EMDB-48673:
Composite map of the endogenous complex of Pfs230-Pfs48/45
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

PDB-9mvt:
Pfs230 domains 1-8 of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

PDB-9mvv:
Pfs230 (D9-D14) with Pfs48/45 of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

EMDB-49573:
Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Method: single particle / : Gharpure A, Fernandez-Quintero ML, Ward AB

PDB-9nnf:
Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Method: single particle / : Gharpure A, Fernandez-Quintero ML, Ward AB

EMDB-39984:
Cryo-EM structure of Mycobacteriophage Douge genome-packed vertex (gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more