[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 56 items for (author: dong & yj)

EMDB-62911:
Cryo-EM structure of apo GPR50 with BRIL fusion, anti-BRIL Fab, and anti-Fab Nb complex
Method: single particle / : Shin J, Cho Y

EMDB-39670:
Structure of a murine monoclonal antibody Fab5 targeting Epstein-Barr virus gB
Method: single particle / : Fang XY, Sun C, Zeng MS, Liu Z

EMDB-61318:
Ribosome from rattus norvegicus hippocampal primary neuron
Method: subtomogram averaging / : Jung M, Roh S

EMDB-61633:
Decoding1 states from rattus norvegicus 80S ribosome
Method: subtomogram averaging / : Jung M, Roh S

EMDB-61634:
Decoding2 states from rattus norvegicus 80S ribosome
Method: subtomogram averaging / : Jung M, Roh S

EMDB-61635:
DecodingZ states from rattus norvegicus 80S ribosome
Method: subtomogram averaging / : Jung M, Roh S

EMDB-61636:
Hibernating states from rattus norvegicus 80S ribosome
Method: subtomogram averaging / : Jung M, Roh S

EMDB-61637:
Pre states with factor from rattus norvegicus 80S ribosome
Method: subtomogram averaging / : Jung M, Roh S

EMDB-61638:
Pre states without factor from rattus norvegicus 80S ribosome
Method: subtomogram averaging / : Jung M, Roh S

EMDB-61639:
Rotated1 states without factor from rattus norvegicus 80S ribosome
Method: subtomogram averaging / : Jung M, Roh S

EMDB-61640:
Rotated2 states without factor from rattus norvegicus 80S ribosome
Method: subtomogram averaging / : Jung M, Roh S

EMDB-60841:
Consensus map of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60842:
AGD-Focused map
Method: single particle / : Park JB, Roh SH

EMDB-60843:
GNATD focused acetyltransferase
Method: single particle / : Park JB, Rho SH

EMDB-60844:
RD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60845:
Consensus map of ligand bound acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60846:
AGD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60847:
GNATD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60848:
RD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60849:
Apo-state E.coli PatZ
Method: single particle / : Park JB, Roh SH

EMDB-60853:
Liganded-state E.coli PatZ
Method: single particle / : Park JB, Roh SH

EMDB-39338:
Cryo-EM structure of the human DSS1-INTAC complex
Method: single particle / : Zheng H, Xu Y, Cheng J

EMDB-39345:
Cryo-EM structure of human apo GPR156
Method: single particle / : Ma XY, Chen LN, Liao MH, Zhang LY, Xi K, Guo JM

EMDB-39356:
Cryo-EM structure of human GPR156-Gi3 complex
Method: single particle / : Ma XY, Chen LN, Liao MH, Zhang LY, Xi K, Guo JM

EMDB-39688:
BA.2.86 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-39689:
Structure of BA.2.86 spike protein in complex with ACE2.
Method: single particle / : Wang YJ, Zang X, Sun L

EMDB-39690:
Structure of JN.1 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-39691:
The JN.1 spike protein (S) in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-35953:
Immune complex of W328-6H2 Fab binding the RBD of SARS-CoV-1 2p spike protein
Method: single particle / : Nan XY, Li YJ

EMDB-35961:
Immune complex of W328-6H2 Fab binding the RBD of SARS-CoV-2 WT 6p spike protein
Method: single particle / : Nan XY, Li YJ

EMDB-35962:
Immune complex of W328-6H2 Fab binding the RBD of Omicron BA.1 6p spike protein added BS3 crosslinker
Method: single particle / : Nan XY, Li YJ, Li JY

EMDB-35963:
Immune complex of W328-6H2 IgG binding the RBD of Omicron BA.1 6p spike protein
Method: single particle / : Nan XY, Li YJ

EMDB-35970:
Human ACE2 binding the complex of Omicron BA.1 6p spike protein and W328-6H2 IgG
Method: single particle / : Nan XY, Li YJ

EMDB-35986:
Cryo-EM structure of SARS-CoV-1 2p spike protein in complex with W328-6H2 IgG
Method: single particle / : Nan XY, Li YJ

EMDB-35995:
Cryo-EM structure of SARS-CoV-2 WT 6p spike protein in complex with W328-6H2 IgG
Method: single particle / : Nan XY, Li YJ

EMDB-36058:
Cryo-EM structure of Omicron BA.1 6p spike protein in complex with W328-6H2 IgG
Method: single particle / : Nan XY, Li YJ

EMDB-36113:
Cryo-EM structure of SARS-CoV-1 2p RBD in complex with W328-6H2(local refinement)
Method: single particle / : Nan XY, Li YJ

EMDB-36121:
Cryo-EM structure of SARS-CoV-2 WT RBD in complex with W328-6H2 (local refinement)
Method: single particle / : Nan XY, Li YJ

EMDB-36122:
Cryo-EM structure of Omicron BA.1 RBD in complex with W328-6H2 (local refinement)
Method: single particle / : Nan XY, Li YJ

EMDB-36257:
Immune complex of W328-6H2 IgG binding the RBD of SARS-CoV-1 2p spike protein
Method: single particle / : Nan XY, Li YJ

EMDB-36267:
Immune complex of W328-6H2 IgG binding the RBD of SARS-CoV-2 WT 6p spike protein
Method: single particle / : Nan XY, Li YJ

EMDB-36202:
Cryo-EM structure of alpha-synuclein gS87 fibril
Method: helical / : Xia WC, Sun YP, Liu C, Tao YQ

EMDB-36203:
Cryo-EM structure of alpha-synuclein pS87 fibril
Method: helical / : Xia WC, Sun YP, Liu C, Tao YQ

EMDB-35514:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun P, Zhang Y

EMDB-38938:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun P, Zhang Y

EMDB-38939:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun P, Zhang Y

EMDB-38980:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun J, Zhang Y

EMDB-35516:
Cryo-EM structure of the CD97-G13 complex
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P

EMDB-35130:
Clostridium thermocellum RNA polymerase transcription open complex with SigI1 and its promoter
Method: single particle / : Li J, Zhang H, Li D, Feng Y, Zhu P

EMDB-35131:
Clostridium thermocellum RNA polymerase transcription open complex with SigI6 and its promoter
Method: single particle / : Li J, Zhang H, Li D, Feng Y, Zhu P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more