[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 62 items for (author: dong & xc)

EMDB-65931:
Cryo-EM consensus map of PSI-LHCI-LHCII supercomplex from Euglena gracilis
Method: single particle / : Huang GQ, Dong SS, Sui SF, Qin XC

EMDB-65939:
Cryo-EM focused refinement map of LHC-(6-9) from Euglena gracilis
Method: single particle / : Huang GQ, Dong SS, Sui SF, Qin XC

EMDB-65940:
Cryo-EM focused refinement map of LHC-10 of the PSI-LHCI-LHCII supercomplex from Euglena gracilis
Method: single particle / : Huang GQ, Dong SS, Sui SF, Qin XC

EMDB-68584:
Structure of the IL-31/IL-31RA/OSMRB complex
Method: single particle / : Feng Y, Dong XC

EMDB-71042:
Cryo-EM structure of chicken ROS1 in apo-state. Cryo-EM refinement is focused on the "head" region of chicken ROS1.
Method: single particle / : Bai XC, Zhang XW

EMDB-71047:
Cryo-EM structure of chicken ROS1 in apo-state. Cryo-EM refinement is focused on the "leg" region of chicken ROS1.
Method: single particle / : Bai XC, Zhang XW

EMDB-71049:
Cryo-EM structure of 1:1 chicken ROS1 and chicken NEL complex.
Method: single particle / : An WD, Zhang XW, Bai XC

EMDB-71051:
Cryo-EM structure of chicken NEL dimer bound with one human NICOL.
Method: single particle / : An WD, Zhang XW, Bai XC

EMDB-71057:
Cryo-EM structure of 1:2:1 ROS1/NEL/NICOL holo-complex, conformation 1.
Method: single particle / : An WD, Zhang XW, Bai XC

EMDB-71058:
Cryo-EM structure of 1:2:1 ROS1/NEL/NICOL holo-complex, conformation 2.
Method: single particle / : An WD, Zhang XW, Bai XC

EMDB-71059:
Cryo-EM structure of chicken ROS1 in apo-state. This is the complete map and model.
Method: single particle / : Bai XC, Zhang XW

EMDB-47031:
Insulin receptor bound with de novo designed agonist called "RF-405".
Method: single particle / : Bai XC

EMDB-47041:
Insulin receptor bound with de novo designed agonist called "S2-F1-S1"
Method: single particle / : Bai XC

EMDB-47043:
Insulin receptor in complex with both insulin and de novo designed site-2 binder "S2B".
Method: single particle / : Bai XC

EMDB-61191:
Cryo-EM structure of URAT1 in complex with uric acid
Method: single particle / : Zhao Y, Yu Z

EMDB-61192:
Cryo-EM structure of URAT1 in complex with benzbromarone
Method: single particle / : Zhao Y, Yu Z

EMDB-61194:
Cryo-EM structure of URAT1 in complex with verinurad
Method: single particle / : Zhao Y, Yu Z

EMDB-61195:
Cryo-EM structure of URAT1 in complex with sulfinpyrazone
Method: single particle / : Zhao Y, Yu Z

EMDB-48797:
Cryo-EM structure of human PSS2
Method: single particle / : Li DY, Li XC

EMDB-61201:
Arabidopsis high-affinity urea transport DUR3 in the urea-bound occluded conformation, dimeric state
Method: single particle / : An W, Gao Y, Zhang XC

EMDB-61202:
Arabidopsis high-affinity urea transport DUR3 in the inward-facing open conformation, dimeric state
Method: single particle / : An W, Gao Y, Zhang XC

EMDB-39025:
Structure of HCoV-HKU1A spike in the functionally anchored-3up conformation with 3TMPRSS2
Method: single particle / : Lu YC, Zhang X, Wang HF, Liu XC, Sun L, Yang HT

EMDB-39036:
Structure of HCoV-HKU1C spike in the functionally anchored-1up conformation with 1TMPRSS2
Method: single particle / : Lu YC, Zhang X, Wang HF, Liu XC, Sun L, Yang HT

EMDB-39037:
Structure of HCoV-HKU1C spike in the functionally anchored-2up conformation with 2TMPRSS2
Method: single particle / : Lu YC, Zhang X, Wang HF, Liu XC, Sun L, Yang HT

EMDB-39038:
Structure of HCoV-HKU1C spike in the functionally anchored-3up conformation with 2TMPRSS2
Method: single particle / : Lu YC, Wang HF, Zhang X, Liu XC, Sun L, Yang HT

EMDB-39039:
Structure of HCoV-HKU1C spike in the functionally anchored-3up conformation with 3TMPRSS2
Method: single particle / : Lu YC, Zhang X, Wang HF, Liu XC, Sun L, Yang HT

EMDB-39040:
Local structure of HCoV-HKU1C spike in complex with TMPRSS2 and glycan
Method: single particle / : Wang HF, Zhang X, Lu YC, Liu XC, Sun L, Yang HT

EMDB-34880:
Cryo-EM structure of human high-voltage activated L-type calcium channel CaV1.2 (apo)
Method: single particle / : Wei Y, Yu Z, Zhao Y

EMDB-34891:
Cryo-EM structure of human high-voltage activated L-type calcium channel CaV1.2 in complex with tetrandrine (TET)
Method: single particle / : Wei Y, Yu Z, Zhao Y

EMDB-34892:
Cryo-EM structure of human high-voltage activated L-type calcium channel CaV1.2 in complex with benidipine (BEN)
Method: single particle / : Wei Y, Yu Z, Zhao Y

EMDB-41877:
Cryo-EM structure of long form insulin receptor (IR-B) in the apo state
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-41878:
Cryo-EM structure of long form insulin receptor (IR-B) with four IGF2 bound, symmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-41880:
Cryo-EM structure of long form insulin receptor (IR-B) with three IGF2 bound, asymmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-43279:
Cryo-EM structure of short form insulin receptor (IR-A) with four IGF2 bound, symmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-43280:
Cryo-EM structure of short form insulin receptor (IR-A) with three IGF2 bound, asymmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-29677:
Structure of the methylosome-Lsm10/11 complex
Method: single particle / : Lin M, Paige A, Tong L

EMDB-32228:
Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c (the larger form)
Method: single particle / : Huang GQ, Dong SS, Qin XC, Sui SF

EMDB-33285:
Structure of human R-type voltage-gated CaV2.3-alpha2/delta1-beta1 channel complex in the ligand-free (apo) state
Method: single particle / : Gao Y, Qiu Y, Wei Y, Dong Y, Zhang XC, Zhao Y

EMDB-32229:
Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c (the smaller form)
Method: single particle / : Huang GQ, Dong SS, Qin XC, Sui SF

EMDB-32971:
Structure of a human NHE3-CHP1 complex in the autoinhibited state
Method: single particle / : Dong Y, Li H, Gao Y, Zhang XC, Zhao Y

EMDB-32341:
cryo-EM structure of human NaV1.3/beta1/beta2-bulleyaconitineA
Method: single particle / : Jiang D, Li X

EMDB-32343:
Cryo-EM structure of human NaV1.3/beta1/beta2-ICA121431
Method: single particle / : Jiang D, Li X

EMDB-32336:
Structure of a human glycosylphosphatidylinositol (GPI) transamidase
Method: single particle / : Zhang H, Su J

EMDB-32452:
Structure of a human glycosylphosphatidylinositol (GPI) transamidase-RNF121 complex
Method: single particle / : Zhang H, Su J, Li B, Gao Y, Zhang XC, Zhao Y

EMDB-31958:
Human N-type voltage gated calcium channel CaV2.2-alpha2/delta1-beta1 complex, apo state
Method: single particle / : Dong Y, Gao Y

EMDB-31959:
Human N-type voltage gated calcium channel CaV2.2-alpha2/delta1-beta1 complex, bound to ziconotide
Method: single particle / : Dong Y, Gao Y

EMDB-31960:
Human N-type voltage gated calcium channel CaV2.2-alpha2/delta1-beta1 complex, bound to PD173212
Method: single particle / : Dong Y, Gao Y

EMDB-31961:
Human N-type voltage gated calcium channel CaV2.2-alpha2/delta1-beta1 complex, bound to CaV2.2-blocker1
Method: single particle / : Dong Y, Gao Y

EMDB-31459:
DNQX-bound GluK2-1xNeto2 complex, with asymmetric LBD
Method: single particle / : He LL, Gao YW, Li B, Zhao Y

EMDB-31460:
Kainate-bound GluK2-1xNeto2 complex, at the desensitized state
Method: single particle / : He LL, Gao YW, Li B, Zhao Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more