[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 58 items for (author: domanska & a)

EMDB-55311:
Immature TBEV envelope spike with interaction partners underneath - SPA
Method: single particle / : Fuzik T, Plevka P, Smerdova L, Nepovimova L

EMDB-55312:
Immature TBEV envelope spike with interaction partners underneath - STA
Method: subtomogram averaging / : Fuzikt T, Plevka P, Smerdova L, Nepovimova L

EMDB-55313:
Asymmetric reconstruction of immature TBEV particle with 2 missing pentamers
Method: single particle / : Fuzik T, Plevka P, Smerdova L, Nepovimova L

EMDB-55314:
Asymmetric reconstruction of immature TBEV particle with 2 irregularities
Method: single particle / : Fuzikt T, Plevka P, Smerdova L, Nepovimova L

EMDB-55315:
Asymmetric reconstruction of immature TBEV particle with altered 5-fold
Method: single particle / : Fuzikt T, Plevka P, Smerdova L, Nepovimova L

EMDB-55316:
Asymmetric reconstruction of TBEV virion
Method: single particle / : Fuzikt T, Plevka P, Smerdova L, Nepovimova L

EMDB-19774:
Coxsackievirus A9 bound with compound 20 (CL300)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

EMDB-50039:
Coxsackievirus A9 bound with compound 14 (CL275)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

EMDB-50269:
Coxsackievirus A9 bound with compound 16 (CL298)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

EMDB-50324:
Coxsackievirus A9 bound with compound 17 (CL301)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

EMDB-50414:
Coxsackievirus A9 bound with compound 18 (CL304)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

EMDB-50614:
Coxsackievirus A9 bound with compound 15 (CL278)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

EMDB-50617:
Coxsackievirus A9 bound with compound 19 (CL313)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

EMDB-50636:
Coxsackievirus A9 bound with CL213.
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

PDB-8s7j:
Coxsackievirus A9 bound with compound 20 (CL300)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

PDB-9exi:
Coxsackievirus A9 bound with compound 14 (CL275)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

PDB-9fa9:
Coxsackievirus A9 bound with compound 16 (CL298)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

PDB-9fcz:
Coxsackievirus A9 bound with compound 17 (CL301)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

PDB-9fgn:
Coxsackievirus A9 bound with compound 18 (CL304)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

PDB-9fo2:
Coxsackievirus A9 bound with compound 15 (CL278)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

PDB-9fo5:
Coxsackievirus A9 bound with compound 19 (CL313)
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

PDB-9fp5:
Coxsackievirus A9 bound with CL213.
Method: single particle / : Plavec Z, Butcher SJ, Mitchell C, Buckner C

EMDB-17945:
Tick-borne encephalitis virus (strain HYPR) immature particle
Method: single particle / : Fuzik T, Plevka P, Smerdova L, Novacek J

EMDB-17946:
Tick-borne encephalitis virus (strain Neudoerfl) immature particle
Method: single particle / : Fuzik T, Plevka P, Smerdova L, Novacek J

EMDB-17947:
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Method: single particle / : Fuzik T, Plevka P, Smerdova L, Novacek J

PDB-8puv:
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Method: single particle / : Fuzik T, Plevka P, Smerdova L, Novacek J

EMDB-17808:
Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Method: single particle / : Anastasina M, Domanska A, Pulkkinen LIA, Butcher SJ

EMDB-17809:
Tick-borne encephalitis virus Kuutsalo-14 immature virus particle
Method: single particle / : Anastasina M, Domanska A, Pulkkinen LIA, Butcher SJ

PDB-8ppq:
Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Method: single particle / : Anastasina M, Domanska A, Pulkkinen LIA, Butcher SJ

EMDB-19477:
Saccharomyces cerevisiae FAS type I
Method: single particle / : Mann D, Grininger M, Ludig D, Sachse C

EMDB-19489:
Tobacco mosaic virus from scanning transmission electron microscopy at CSA=2.0 mrad
Method: helical / : Mann D, Filopoulou A, Sachse C

EMDB-15634:
native Coxsackievirus A9
Method: single particle / : Domanska A, Plavec Z, Ruokolainen V, Marjomaki VS, Butcher SJ

PDB-8at5:
native Coxsackievirus A9
Method: single particle / : Domanska A, Plavec Z, Ruokolainen V, Marjomaki VS, Butcher SJ

EMDB-15692:
Expanded Coxsackievirus A9 after 0.01% faf-BSA treatment
Method: single particle / : Domanska A, Plavec Z, Ruokolainen V, Loflund B, Marjomaki VS, Butcher SJ

PDB-8aw6:
Expanded Coxsackievirus A9 after 0.01% faf-BSA treatment
Method: single particle / : Domanska A, Plavec Z, Ruokolainen V, Loflund B, Marjomaki VS, Butcher SJ

EMDB-15706:
Expanded Coxsackievirus A9 after treatment with endosomal ionic buffer
Method: single particle / : Domanska A, Plavec Z, Ruokolainen V, Loflund B, Marjomaki VS, Butcher SJ

PDB-8axx:
Expanded Coxsackievirus A9 after treatment with endosomal ionic buffer
Method: single particle / : Domanska A, Plavec Z, Ruokolainen V, Loflund B, Marjomaki VS, Butcher SJ

EMDB-14512:
Tick-borne encephalitis virus Kuutsalo-14
Method: single particle / : Pulkkinen LIA, Barrass SV, Anastasina M, Butcher SJ

EMDB-14516:
Tick-Borne Encephalitis virus Kuutsalo-14
Method: single particle / : Pulkkinen LIA, Barrass SV, Anastasina M, Butcher SJ

PDB-7z51:
Tick-borne encephalitis virus Kuutsalo-14
Method: single particle / : Pulkkinen LIA, Barrass SV, Anastasina M, Butcher SJ

EMDB-11165:
Coxsackievirus B4 in complex with capsid binder compound 48
Method: single particle / : Flatt JW, Domanska A

EMDB-11166:
Coxsackievirus B3 in complex with capsid binder compound 17
Method: single particle / : Domanska A, Flatt JW

EMDB-11300:
Coxsackievirus B4 strain E2
Method: single particle / : Flatt JW, Domanska A

PDB-6zck:
Coxsackievirus B4 in complex with capsid binder compound 48
Method: single particle / : Flatt JW, Domanska A, Butcher SJ

PDB-6zcl:
Coxsackievirus B3 in complex with capsid binder compound 17
Method: single particle / : Domanska A, Flatt JW, Butcher SJ

PDB-6zms:
Coxsackievirus B4 strain E2
Method: single particle / : Flatt JW, Domanska A, Butcher SJ

EMDB-0565:
Extracellular factors prime enterovirus particles for uncoating
Method: single particle / : Domanska A, Ruokolainen V

EMDB-4903:
Echovirus 1 intact particle
Method: single particle / : Domanska A, Ruokolainen VP

PDB-6o06:
Extracellular factors prime enterovirus particles for uncoating
Method: single particle / : Domanska A, Ruokolainen V, Pelliccia M, Laajala M, Butcher SJ, Marjomaki VS

PDB-6rjf:
Echovirus 1 intact particle
Method: single particle / : Domanska A, Ruokolainen VP, Pelliccia M, Laajala MA, Marjomaki VS, Butcher SJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more