[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,287 items for (author: ding & d)

EMDB-55351:
Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
Method: single particle / : Yudin D, Jaskolowski M, Scaiola A, Ban N

PDB-9syr:
Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
Method: single particle / : Yudin D, Jaskolowski M, Scaiola A, Ban N

EMDB-53380:
cryo-EM structure of TolQR conformation2 in SMA nanodiscs
Method: single particle / : Luo Y, Shen C

EMDB-53394:
cryo-EM structure of TolQRA in nanodiscs
Method: single particle / : Luo Y, Shen C

EMDB-70088:
cryo-EM structure of TolQR conformation1 in SMA nanodiscs
Method: single particle / : Luo YB, Shen CR

PDB-9o40:
cryo-EM structure of TolQR conformation1 in SMA nanodiscs
Method: single particle / : Luo YB, Shen CR

PDB-9quq:
cryo-EM structure of TolQR conformation2 in SMA nanodiscs
Method: single particle / : Luo Y, Shen C

PDB-9qvd:
cryo-EM structure of TolQRA in nanodiscs
Method: single particle / : Luo Y, Shen C

EMDB-64376:
Plant-TaNNS
Method: single particle / : Wang L, Zhao J, Yin C, Chi C, Hou S

PDB-9uob:
Plant-TaNNS
Method: single particle / : Wang L, Zhao J, Yin C, Chi C, Hou S

EMDB-62564:
Structure of TauT in the apo state
Method: single particle / : Yin YX, Lu YS, Ding D

EMDB-62565:
Structure of TauT in complex with taurine
Method: single particle / : Yin YX, Lu YS, Ding D

EMDB-62566:
Structure of TauT in complex with taurine
Method: single particle / : Yin YX, Lu YS, Ding D

EMDB-62567:
Structure of TauT in complex with GABA
Method: single particle / : Yin YX, Lu YS, Ding D

EMDB-62569:
Structure of TauT in complex with Guanidinoethyl sulfonate
Method: single particle / : Yin YX, Lu YS, Ding D

PDB-9kts:
Structure of TauT in the apo state
Method: single particle / : Yin YX, Lu YS, Ding D

PDB-9ktt:
Structure of TauT in complex with taurine
Method: single particle / : Yin YX, Lu YS, Ding D

PDB-9ktu:
Structure of TauT in complex with beta-alanine
Method: single particle / : Yin YX, Lu YS, Ding D

PDB-9ktv:
Structure of TauT in complex with GABA
Method: single particle / : Yin YX, Lu YS, Ding D

PDB-9ktx:
Structure of TauT in complex with Guanidinoethyl sulfonate
Method: single particle / : Yin YX, Lu YS, Ding D

EMDB-61168:
Structure of Chikungunya virus infectious particles, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

PDB-9j6d:
Structure of Chikungunya virus infectious particles, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

EMDB-73361:
Structure of HTTQ23-HAP40 complex bound to a small molecule ligand
Method: single particle / : Balakrishnan S, Deme J, Lea SM, Harding RJ

PDB-9yr6:
Structure of HTTQ23-HAP40 complex bound to a small molecule ligand
Method: single particle / : Balakrishnan S, Deme J, Lea SM, Harding RJ

EMDB-60966:
Cryo-EM structure of chikungunya virus glycoprotein E1-E2 with C34 Fab.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

EMDB-60970:
VLP structure of Chikungunya virus, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

PDB-9ixa:
Cryo-EM structure of chikungunya virus glycoprotein E1-E2 with C34 Fab.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

PDB-9ixi:
VLP structure of Chikungunya virus, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

EMDB-62276:
Cryo-EM structure of LIPID-mediated dimer of human norepinephrine transporter NET in the presence of Vanoxerine in an inward-open state at resolution of 2.52 angstrom
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-62281:
Cryo-EM structure of LIPID-mediated human norepinephrine transporter NET in the presence of Levomilnacipran in an inward-open state at resolution of 2.46 angstrom.
Method: single particle / : Zhang H, Jiang Y, Xu EH

EMDB-62289:
Cryo-EM structure of lipid-mediated dimer of human norepinephrine transporter NET in the presence of the F3288-0031 in an inward-open state at resolution of 3.1 angstrom
Method: single particle / : Zhang H, Zhang TW, Xu EH, Jiang Y

PDB-9kdh:
Cryo-EM structure of LIPID-mediated dimer of human norepinephrine transporter NET in the presence of Vanoxerine in an inward-open state at resolution of 2.52 angstrom
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-9kdm:
Cryo-EM structure of LIPID-mediated human norepinephrine transporter NET in the presence of Levomilnacipran in an inward-open state at resolution of 2.46 angstrom.
Method: single particle / : Zhang H, Jiang Y, Xu EH

PDB-9ke3:
Cryo-EM structure of lipid-mediated dimer of human norepinephrine transporter NET in the presence of the F3288-0031 in an inward-open state at resolution of 3.1 angstrom
Method: single particle / : Zhang H, Zhang TW, Xu EH, Jiang Y

EMDB-62389:
Structure of Nectin-4 D1 domain in complex with the Fab fragment of 9MW2821 mAb
Method: single particle / : Wen HY

PDB-9kkj:
Structure of Nectin-4 D1 domain in complex with the Fab fragment of 9MW2821 mAb
Method: single particle / : Wen HY

EMDB-71900:
The local refinement map of Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

EMDB-71899:
Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

EMDB-60997:
VLP structure of Chikungunya virus complexed with C34 Fab, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

PDB-9iyi:
VLP structure of Chikungunya virus complexed with C34 Fab, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

EMDB-62267:
Cryo-EM structure of lipid-mediated dimer of human norepinephrine transporter NET in the presence of the antidepressant vilazodone in an inward-open state at resolution of 2.44 angstrom.
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-9kda:
Cryo-EM structure of lipid-mediated dimer of human norepinephrine transporter NET in the presence of the antidepressant vilazodone in an inward-open state at resolution of 2.44 angstrom.
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-63715:
Cryo-EM structure of the human TRPA1 ion channel in complex with crotalphine.
Method: single particle / : Kang MM, Zhang YM, Ding XF, Wang LJ, Sun WY, Jiang H, Chen D, Xu JF, Pang XY

EMDB-63720:
Cryo-EM structure of the human TRPA1 ion channel in ligand-free state.
Method: single particle / : Kang MM, Zhang YM, Ding XF, Wang LJ, Sun WY, Jiang H, Chen D, Xu JF, Pang XY

PDB-9m8n:
Cryo-EM structure of the human TRPA1 ion channel in complex with crotalphine.
Method: single particle / : Kang MM, Zhang YM, Ding XF, Wang LJ, Sun WY, Jiang H, Chen D, Xu JF, Pang XY

PDB-9m8s:
Cryo-EM structure of the human TRPA1 ion channel in ligand-free state.
Method: single particle / : Kang MM, Zhang YM, Ding XF, Wang LJ, Sun WY, Jiang H, Chen D, Xu JF, Pang XY

EMDB-52749:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 1)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52750:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 2)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52751:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 3)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52752:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 4)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more