[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 742 items for (author: das & c)

EMDB-44118:
Actin-bound Legionella pneumophila AMPylase LnaB with AMPylated catalytic histidine
Method: single particle / : Zhang Z, Das C

PDB-9b2z:
Actin-bound Legionella pneumophila AMPylase LnaB with AMPylated catalytic histidine
Method: single particle / : Zhang Z, Das C

EMDB-45601:
Human E3 ligase E6AP in complex with HPV16-E6 and p53
Method: single particle / : Kenny S, Das C

PDB-9cht:
Human E3 ligase E6AP in complex with HPV16-E6 and p53
Method: single particle / : Kenny S, Das C

EMDB-19185:
BmrA E504-100uMATPMg-IF
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

PDB-8ria:
BmrA E504-100uMATPMg-IF
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

EMDB-19115:
BmrA E504-R6G
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

PDB-8rf1:
BmrA E504-R6G
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

EMDB-19135:
BmrA E504-R6G-70uMATPMg
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

PDB-8rgn:
BmrA E504-R6G-70uMATPMg
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

EMDB-19130:
BmrA E504-R6G-25uMATP-Mg
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

PDB-8rg7:
BmrA E504-R6G-25uMATP-Mg
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

EMDB-19131:
BmrA E504-25uMATPMg
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

PDB-8rga:
BmrA E504-25uMATPMg
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

EMDB-19113:
BmrA E504-apo
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

PDB-8rez:
BmrA E504-apo
Method: single particle / : Gobet A, Zarkadas E, Schoehn G, Falson P, Chaptal V

EMDB-50448:
SSU(head) structure derived from the SSU sample of the mitoribosome from T. gondii.
Method: single particle / : Rocha REO, Barua S, Boissier F, Nguyen TT, Hashem Y

EMDB-50470:
SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.
Method: single particle / : Rocha REO, Barua S, Boissier F, Nguyen TT, Hashem Y

EMDB-51104:
LSU structure derived from the LSU sample of the mitoribosome from T. gondii.
Method: single particle / : Rocha REO, Barua S, Boissier F, Nguyen TT, Hashem Y

PDB-9fi8:
SSU(head) structure derived from the SSU sample of the mitoribosome from T. gondii.
Method: single particle / : Rocha REO, Barua S, Boissier F, Nguyen TT, Hashem Y

PDB-9fia:
SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.
Method: single particle / : Rocha REO, Barua S, Boissier F, Nguyen TT, Hashem Y

PDB-9g6k:
LSU structure derived from the LSU sample of the mitoribosome from T. gondii.
Method: single particle / : Rocha REO, Barua S, Boissier F, Nguyen TT, Hashem Y

PDB-9cbu:
Tetrahymena ribozyme with consensus water and magnesium ions
Method: single particle / : Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

PDB-9cbw:
Tetrahymena ribozyme with consensus water and magnesium ions
Method: single particle / : Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

PDB-9cbx:
Tetrahymena ribozyme with automatically identified water and magnesium ions
Method: single particle / : Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

PDB-9cby:
Tetrahymena ribozyme with automatically identified water and magnesium ions
Method: single particle / : Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

EMDB-42498:
Tetrahymena ribozyme with water and magnesium ions
Method: single particle / : Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

EMDB-42499:
Tetrahymena ribozyme with water and magnesium ions
Method: single particle / : Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

EMDB-19884:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epr:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19078:
Saccharomyces cerevisiae Prp43 helicase in complex with Pxr1
Method: single particle / : Rabl J, Portugal Calisto D, Panse VG

PDB-8rdy:
Saccharomyces cerevisiae Prp43 helicase in complex with Pxr1
Method: single particle / : Rabl J, Portugal Calisto D, Panse VG

EMDB-18778:
Structure of DNMT3A1 UDR region bound to H2AK119ub nucleosome
Method: single particle / : Wapenaar H, Wilson MD

EMDB-18793:
Cryo-EM density map of DNMT3A1-DNMT3L on a human H2AKc119ub nucleosome at 5.1 A resolution
Method: single particle / : Wapenaar H, Wilson MD

PDB-8qzm:
Structure of DNMT3A1 UDR region bound to H2AK119ub nucleosome
Method: single particle / : Burdett H, Wapenaar H, Wilson MD

EMDB-19882:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19883:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epp:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epq:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19653:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-19654:
Human RNF213 (consensus refinement without accounting for flexibility)
Method: single particle / : Naydenova K, Randow F

EMDB-19655:
Human RNF213: focused refinement of ATPase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19656:
Human RNF213: focused refinement of stalk domain
Method: single particle / : Naydenova K, Randow F

EMDB-19657:
Human RNF213: focused refinement of carbohydrate binding module (CBM) domain
Method: single particle / : Naydenova K, Randow F

EMDB-19658:
Human RNF213: focused refinement of E3 ligase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19659:
Human RNF213: focused refinement of E3-RING domain
Method: single particle / : Naydenova K, Randow F

PDB-8s24:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-41658:
TCR in nanodisc ND-I
Method: single particle / : Notti RQ, Walz T

EMDB-41660:
TCR in nanodisc ND-II
Method: single particle / : Notti RQ, Walz T

EMDB-44417:
TCR GDN detergent micelle
Method: single particle / : Notti RQ, Walz T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more