[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 55 items for (author: darren & m)

EMDB-75100:
Regional structure of Slk19 purified from budding yeast
Method: single particle / : Darren M, Mengqiu J, Sue B

EMDB-74076:
Dimer of ATPase BrxC containing a Walker B mutation and bound to ATP from the Acinetobacter BREX system
Method: single particle / : Doyle LA, Stoddard BL, Kaiser B, Kaiser A

EMDB-74400:
Volume of PglZ in complex with BrxB-BrxC fusion from the Acinetobacter BREX system
Method: single particle / : Doyle LA, Stoddard BL, Kaiser B, Kaiser A

EMDB-74435:
Dimer of BrxC-BrxB fusion complexed with PglZ from the Acinetobacter BREX system
Method: single particle / : Doyle LA, Stoddard BL, Kaiser B, Kaiser A

PDB-9zdx:
Dimer of ATPase BrxC containing a Walker B mutation and bound to ATP from the Acinetobacter BREX system
Method: single particle / : Doyle LA, Stoddard BL, Kaiser B, Kaiser A

PDB-9zn5:
Hybrid model of a dimer of BrxC-BrxB fusion complexed with PglZ from the Acinetobacter BREX system
Method: single particle / : Doyle LA, Stoddard BL, Kaiser B, Kaiser A

EMDB-49827:
Complex of BREX proteins BrxB and PglZ from Salmonella typhimurium
Method: single particle / : Doyle LA, Stoddard B, Blower TR, Kaiser B

PDB-9nv3:
Hybrid model of a complex of BREX proteins BrxB and PglZ from Salmonella typhimurium
Method: single particle / : Doyle LA, Stoddard B, Blower TR, Kaiser B

EMDB-47571:
Fully human monoclonal antibody targeting the cysteine-rich substrate-interacting region of ADAM17 on cancer cells.
Method: single particle / : Saha N, De La Cruz MJ, Goldgur Y, Nikolov DB

PDB-9e6k:
Fully human monoclonal antibody targeting the cysteine-rich substrate-interacting region of ADAM17 on cancer cells.
Method: single particle / : Saha N, De La Cruz MJ, Goldgur Y, Nikolov DB

EMDB-18137:
HK68 cryo-EM structure achieved via rapid-spray and vitrification for grid preparation
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl PD, Tiede C, Muench S, Tomlinson D, Fontana J

EMDB-17725:
CryoEM reconstruction of Influenza A virus (HK68) hemagglutinin bound to an Affimer reagent
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl PD, Tiede C, Muench S, Tomlinson D, Fontana J

EMDB-17724:
CryoEM reconstruction of hemagglutinin HK68 of Influenza A virus bound to an Affimer reagent
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl DP, Tiede C, Muench S, Tomlinson D, Fontana J

PDB-8pk3:
CryoEM reconstruction of hemagglutinin HK68 of Influenza A virus bound to an Affimer reagent
Method: single particle / : Debski-Antoniak O, Flynn A, Klebl DP, Tiede C, Muench S, Tomlinson D, Fontana J

EMDB-41174:
ssRNA bound SAMHD1 T closed
Method: single particle / : Sung M, Huynh K, Han S

PDB-8tdv:
ssRNA bound SAMHD1 T closed
Method: single particle / : Sung M, Huynh K, Han S

EMDB-41175:
ssRNA bound SAMHD1 T open
Method: single particle / : Sung M, Huynh K, Han S

PDB-8tdw:
ssRNA bound SAMHD1 T open
Method: single particle / : Sung M, Huynh K, Han S

EMDB-41994:
KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41995:
KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinement of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41996:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A: Composite Map from RELION Multi-body Refinement
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41997:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A: Reference Map for Composite Map EMD-41996
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41998:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-41999:
KCTD5/Cullin3/Gbeta1gamma2 Complex State A Body 2: RELION Multi-body Refinemnent of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42000:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B: Composite Map from RELION Multi-body Refinement
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42001:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B: Reference Map for Composite Map EMD-42000
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42002:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42003:
KCTD5/Cullin3/Gbeta1gamma2 Complex State B Body 2: RELION Multi-body Refinement of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42004:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C: Composite Map from RELION Multi-body Refinement
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42005:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C: Reference Map for Composite Map EMD-42004
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42006:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42007:
KCTD5/Cullin3/Gbeta1gamma2 Complex State C Body 2: RELION Multi-body Refinement of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42008:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D: Composite Map from RELION Multi-body Refinement
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42009:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D: Reference Map for Composite Map EMD-42008
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42010:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D Body 1: RELION Multi-body Refinement of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

EMDB-42011:
KCTD5/Cullin3/Gbeta1gamma2 Complex State D Body 2: RELION Multi-body Refinemnent of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Nguyen DM, Narayanan N, Kuntz DA, Prive GG

PDB-8u7z:
KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinment of KCTD5(CTD)/Gbeta1gamma2
Method: single particle / : Kuntz DA, Nguyen DM, Narayanan N, Prive GG

PDB-8u80:
KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinment of KCTD5(BTB)/Cullin3(NTD)
Method: single particle / : Kuntz DA, Nguyen DM, Narayanan N, Prive GG

PDB-8u81:
KCTD5/Cullin3/Gbeta1gamma2 Complex: State A From Composite RELION Multi-body Refinement Map
Method: single particle / : Kuntz DA, Nguyen DM, Narayanan N, Prive GG

PDB-8u82:
KCTD5/Cullin3/Gbeta1gamma2 Complex: State B From Composite RELION Multi-body Refinement Map
Method: single particle / : Kuntz DA, Nguyen DM, Narayanan N, Prive GG

PDB-8u83:
KCTD5/Cullin3/Gbeta1gamma2 Complex: State C From Composite RELION Multi-body Refinement Map
Method: single particle / : Kuntz DA, Nguyen DM, Narayanan N, Prive GG

PDB-8u84:
KCTD5/Cullin3/Gbeta1gamma2 Complex: State D From Composite RELION Multi-body Refinement Map
Method: single particle / : Kuntz DA, Nguyen DM, Narayanan N, Prive GG

EMDB-16963:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

PDB-8olu:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

EMDB-14866:
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=4 VLP)
Method: single particle / : Kingston NJ, Grehan K, Snowden JS, Alzahrani J, Ranson NA, Rowlands DJ, Stonehouse NJ

EMDB-14868:
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=3* VLP)
Method: single particle / : Kingston NJ, Grehan K, Snowden JS, Alzahrani J, Ranson NA, Rowlands DJ, Stonehouse NJ

PDB-7zq8:
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=4 VLP)
Method: single particle / : Kingston NJ, Grehan K, Snowden JS, Alzahrani J, Ranson NA, Rowlands DJ, Stonehouse NJ

PDB-7zqa:
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=3* VLP)
Method: single particle / : Kingston NJ, Grehan K, Snowden JS, Alzahrani J, Ranson NA, Rowlands DJ, Stonehouse NJ

EMDB-12055:
ACAD9-ECSIT-CTD (ACAD9 core)
Method: single particle / : Giachin G, Jessop M, Soler-Lopez M, Gutsche I

EMDB-4610:
CryoEM reconstructuion of Cowpea Mosaic Virus (CPMV) bound to an Affimer reagent
Method: single particle / : Hesketh EL, Tiede C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more