[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 471 items for (author: costa & a)


EMDB Unreleased entry

EMDB-72520:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A


EMDB Unreleased entry

EMDB-72521:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A


EMDB Unreleased entry

EMDB-72522:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A


EMDB Unreleased entry

EMDB-72523:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72462:
Eukaryotic translation initiation factor 2-B in its apo form (active-state) (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72463:
Eukaryotic translation initiation factor 2-B in its apo form (inactive-state) (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72466:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (active-like-state) (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72467:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (inactive state) (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72468:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to the viral effector AcP10
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72477:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (active-like-state) bound to the viral effector AcP10 (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72499:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (active-like-state) asymmetrically bound to the viral effector AcP10 (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72136:
NediV IRES (A site) in complex with Rabbit 80S ribosome
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

EMDB-72137:
NediV IRES (P site) in complex with Rabbit 80S ribosome
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

EMDB-72168:
Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

EMDB-72171:
Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

EMDB-72175:
NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

PDB-9q1q:
NediV IRES (A site) in complex with Rabbit 80S ribosome
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

PDB-9q1s:
NediV IRES (P site) in complex with Rabbit 80S ribosome
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

PDB-9q2m:
Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

PDB-9q2p:
Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

PDB-9q2t:
NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

EMDB-72170:
NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

PDB-9q2o:
NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
Method: single particle / : De S, Altomare CG, Abaeva IS, Dadhwal P, Garg P, Acosta-Reyes F, Brown ZP, Pestova TV, Hellen CUT, Frank J

EMDB-53970:
pre-Initiation Complex on ARS1 DNA (monomer)
Method: single particle / : Puehringer T, Butryn A, Couves EC, Costa A

EMDB-53971:
Pre-Initiation Complex on ARS1 DNA (dimer)
Method: single particle / : Puehringer T, Couves EC, Costa A

EMDB-53972:
Phospho-DH bound by Sld3-MBD on ARS1 DNA
Method: single particle / : Puehringer T, Couves EC, Costa A

EMDB-53973:
Phospho-MCM double hexamer bound to Sld3-Sld7-Cdc45 on ARS1 DNA
Method: single particle / : Puehringer T, Couves EC, Costa A

EMDB-56897:
sCMGE assembled on ARS1 DNA with RPA and no Sld2
Method: single particle / : Puehringer T, Palm G, Costa A

EMDB-56898:
sCMGE assembled on ARS1 DNA with Sld2 and RPA
Method: single particle / : Palm G, Costa A

PDB-28vy:
sCMGE assembled on ARS1 DNA with Sld2 and RPA
Method: single particle / : Butryn A, Palm G, Costa A

PDB-9rhi:
pre-Initiation Complex on ARS1 DNA (monomer)
Method: single particle / : Puehringer T, Butryn A, Couves EC, Costa A

PDB-9rhj:
Pre-Initiation Complex on ARS1 DNA (dimer)
Method: single particle / : Puehringer T, Butryn A, Couves EC, Costa A

PDB-9rhl:
Phospho-DH bound by Sld3-MBD on ARS1 DNA
Method: single particle / : Puehringer T, Couves EC, Costa A

PDB-9rhm:
Phospho-MCM double hexamer bound to Sld3-Sld7-Cdc45 on ARS1 DNA
Method: single particle / : Puehringer T, Butryn A, Couves EC, Costa A

EMDB-71307:
N49P7-FR Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-71308:
eN49P7-FRv1-23 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9p6e:
N49P7-FR Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9p6g:
eN49P7-FRv1-23 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-55269:
Focused map of the FmdABCFG(1) unit of the Mvh-Hdr-Fmd complex of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55270:
Focused map of the MvhB subunit of the Mvh-Hdr-Fmd complex of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55271:
Focused map of the FmdABCFG(2) unit of the Mvh-Hdr-Fmd complex of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55272:
Focused map of the FmdF dimer unit of the Mvh-Hdr-Fmd complex of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55273:
Focused map of the C-terminus of the MvhB subunit of the Mvh-Hdr-Fmd complex of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55274:
Consensus map of the mobile arm under state 2 substate a of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55275:
MvhAGD-focused map of the mobile arm under state 2 substate b of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55276:
HdrA-focused map of the mobile arm under state 2 substate b of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55277:
HdrBC-focused map of the mobile arm under state 2 substate b of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55278:
Consensus map of the mobile arm under state 2 substate b of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55279:
HdrBC-focused map of the mobile arm under state 1 substate a of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

EMDB-55280:
MvhAGD-focused map of the mobile arm under state 1 substate a of M. marburgensis
Method: single particle / : San Segundo-Acosta P, Murphy BJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more