[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 165 items for (author: choi & sh)

EMDB-46708:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. Complex of fAPN with FCoV-23 RBD
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46709:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S short
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46710:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S Do in proximal conformation (local refinement)
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46714:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S long with Do in swung-out conformation
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46716:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S long domain 0 in swung-out conformation (local refinement)
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46739:
Molecular basis of pathogenicity of the recently emerged FCoV-23 coronavirus. FCoV-23 S long with Do in mixed conformations (global refinement).
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-49497:
Consensus map of MIDN-bound 26S proteasome, EB-state
Method: single particle / : Peddada N, Beutler B

EMDB-49498:
Locally Refined map of RP(19S) in substrate-engaged MIDN-bound 26S Proteasome, EB-MIDN state
Method: single particle / : Peddada N, Beutler B

EMDB-49499:
Locally refined map of RPN1-MIDN_alphaHelix-C
Method: single particle / : Peddada N, Beutler B

EMDB-49500:
Locally refined map of RPN11-MIDN_UBL domain
Method: single particle / : Peddada N, Beutler B

EMDB-49501:
Consensus map of 26S proteasome bound to MIDN, EB-MIDN_UBL state
Method: single particle / : Peddada N, Beutler B

EMDB-49502:
Locally refined map of RP(19S) of MIDN-bound 26S proteasome in EB-MIDN_UBL state
Method: single particle / : Peddada N, Beutler B

EMDB-49503:
Consensus map of substrate-free 26S proteasome in presence MG-132
Method: single particle / : Peddada N, Beutler B

EMDB-49504:
Focused map of RP (19S) substrate-free MIDN-free 26S proteasome, SA-like state with MG-132
Method: single particle / : Peddada N, Beutler B

EMDB-49505:
Consensus map of substrate engaged MIDN-bound 26S proteasome, ED-state
Method: single particle / : Peddada N, Beutler B

EMDB-49506:
Locally Refined map of RP(19S) in substrate-engaged MIDN-bound 26S Proteasome, ED-MIDN state
Method: single particle / : Peddada N, Beutler B

EMDB-49507:
Structure of human substrate-free 26S proteasome in the presence of ATPgS and MG-132,SA-like state (composite map)
Method: single particle / : Peddada N, Beutler B

EMDB-49508:
Structure of substrate engaged MIDN-bound human 26S proteasome, EB-MIDN (Composite map)
Method: single particle / : Peddada N, Beutler B

EMDB-49509:
Structure of substrate engaged MIDN-bound human 26S proteasome, EB MIDN_UBL state (Composite map)
Method: single particle / : Peddada N, Beutler B

EMDB-49510:
Structure of substrates-engaged MIDN-bound human 26S proteasome,ED-MIDN state (Composite map)
Method: single particle / : Peddada N, Beutler B

PDB-9nkf:
Structure of human substrate-free 26S proteasome in the presence of ATPgS and MG-132,SA-like state (composite map)
Method: single particle / : Peddada N, Beutler B

PDB-9nkg:
Structure of substrate engaged MIDN-bound human 26S proteasome, EB-MIDN (Composite map)
Method: single particle / : Peddada N, Beutler B

PDB-9nki:
Structure of substrate engaged MIDN-bound human 26S proteasome, EB MIDN_UBL state (Composite map)
Method: single particle / : Peddada N, Beutler B

PDB-9nkj:
Structure of substrates-engaged MIDN-bound human 26S proteasome,ED-MIDN state (Composite map)
Method: single particle / : Peddada N, Beutler B

EMDB-42521:
Structure of Lassa virus glycoprotein (Josiah) on the surface of VSVdG-Lassa-GPC vaccine particle.
Method: single particle / : Enriquez AS, Saphire EO

EMDB-63355:
Cryo-EM structure of the wild-type diabody complex (CitS-diabody #1-TLR3)
Method: single particle / : Kim S, Kim JW, Park JG, Lee SS, Choi SH, Lee JO, Jin MS

EMDB-63356:
Cryo-EM structure of the S82C-S82C diabody complex (CitS-diabody #2-TLR3)
Method: single particle / : Kim S, Kim JW, Park JG, Lee SS, Choi SH, Lee JO, Jin MS

EMDB-63357:
Cryo-EM structure of the G15C-R66C and T83C-T83C diabody complex (CitS-diabody #7-TLR3)
Method: single particle / : Kim S, Kim JW, Park JG, Lee SS, Choi SH, Lee JO, Jin MS

EMDB-63358:
Cryo-EM structure of the Klebsiella pneumoniae CitS (citrate-bound occluded state)
Method: single particle / : Kim S, Kim JW, Park JG, Lee SS, Choi SH, Lee JO, Jin MS

EMDB-47889:
Cryo-EM structure of USP1-UAF1-Ubiquitin in complex with TNG348
Method: single particle / : Whittington DA

PDB-9ebs:
Cryo-EM structure of USP1-UAF1-Ubiquitin in complex with TNG348
Method: single particle / : Whittington DA

EMDB-60210:
Cryo-EM structure of the Drosophila INDY (apo-asymmetric, pH 6)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60213:
Cryo-EM structure of the Drosophila INDY (apo-asymmetric, pH8)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60215:
Cryo-EM structure of the Drosophila INDY (apo outward-open, pH 6)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60216:
Cryo-EM structure of the Drosophila INDY (DIDS-bound asymmetric, pH 6)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60217:
Cryo-EM structure of the Drosophila INDY (DIDS-bound outward-open, pH 6)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60218:
Cryo-EM structure of the Drosophila INDY (citrate-bound inward-occluded, pH 6)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60220:
Cryo-EM structure of the Drosophila INDY (apo inward-open, pH8)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-36571:
Cryo EM map of full length PLC gamma 2
Method: single particle / : Shin YC, Liao M

EMDB-36572:
Cryo EM map of full length PLC gamma 2 in autoinhibition state
Method: single particle / : Shin YC, Liao M

EMDB-36573:
Cryo EM map of full length PLC gamma 2 and FGFR1 Kinase Domain
Method: single particle / : Shin YC, Liao M

PDB-8jqg:
Cryo EM map of full length PLC gamma 2
Method: single particle / : Shin YC, Liao M

PDB-8jqh:
Cryo EM map of full length PLC gamma 2 in autoinhibition state
Method: single particle / : Shin YC, Liao M

PDB-8jqi:
Cryo EM map of full length PLC gamma 2 and FGFR1 Kinase Domain
Method: single particle / : Shin YC, Liao M

EMDB-41849:
Structure of 310-18A5 Fab in complex with A/Solomon Islands/3/2006(H1N1) influenza virus hemagglutinin
Method: single particle / : Lei R, Wu NC

EMDB-37593:
Vibrio vulnificus MARTX effector duet (RDTND-RID) complexed with human Rac1 Q61L and calmodulin
Method: single particle / : Lee Y, Choi S, Jang SY, Hwang J, Kim MH

EMDB-39534:
Cryo-EM structure of the human ABCB6 in complex with Cd(II):GSH
Method: single particle / : Choi SH, Lee SS, Lee HY, Kim S, Kim JW, Jin MS

EMDB-39535:
Cryo-EM structure of the human ABCB6 in complex with Cd(II):Phytochelatin 2
Method: single particle / : Choi SH, Lee SS, Lee HY, Kim S, Kim JW, Jin MS

EMDB-40699:
SARS-CoV-2 replication-transcription complex bound to nsp9 and UMPCPP, as a pre-catalytic NMPylation intermediate
Method: single particle / : Small GI, Darst SA, Campbell EA

EMDB-40707:
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9, as a noncatalytic RNA-nsp9 binding mode
Method: single particle / : Small GI, Darst SA, Campbell EA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more