[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 244 items for (author: chio & u)

EMDB-36989:
Full agonist-bound mu-type opioid receptor-G protein complex
Method: single particle / : Uchikubo-Kamo T, Shirouzu M, Hisano T, Imai S, Kaneko S, Shimada I

EMDB-36990:
Full agonist- and positive allosteric modulator-bound mu-type opioid receptor-G protein complex
Method: single particle / : Uchikubo-Kamo T, Shirouzu M, Hisano T, Imai S, Kaneko S, Shimada I

PDB-8k9k:
Full agonist-bound mu-type opioid receptor-G protein complex
Method: single particle / : Hisano T, Uchikubo-Kamo T, Shirouzu M, Imai S, Kaneko S, Shimada I

PDB-8k9l:
Full agonist- and positive allosteric modulator-bound mu-type opioid receptor-G protein complex
Method: single particle / : Hisano T, Uchikubo-Kamo T, Shirouzu M, Imai S, Kaneko S, Shimada I

EMDB-16103:
Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16104:
Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16105:
Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-44479:
Cryo-EM structure of synthetic claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain, sFab COP-2, and Nanobody
Method: single particle / : Vecchio AJ

EMDB-42977:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 1)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43000:
Cryo-EM structure of SNF2h-nucleosome complex (consensus structure)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43001:
Cryo-EM structure of SNF2h-nucleosome complex (single-bound structure)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43002:
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43003:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 2)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43004:
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex (conformation 1)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43005:
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex (conformation 2)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

PDB-8v4y:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 1)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

PDB-8v6v:
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

PDB-8v7l:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 2)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-15689:
Mouse serotonin 5-HT3A receptor in complex with vortioxetine
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-15699:
Human serotonin 5-HT3A receptor (apo, resting conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-18179:
Human KMN network (outer kinetochore)
Method: single particle / : Raisch T, Polley S, Vetter I, Musacchio A, Raunser S

PDB-8q5h:
Human KMN network (outer kinetochore)
Method: single particle / : Raisch T, Polley S, Vetter I, Musacchio A, Raunser S

EMDB-17241:
C. elegans L1 80S ribosome
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17242:
C. elegans L1 larva 80S ribosome class 1
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17243:
C. elegans L1 larva 80S ribosome class 2
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17244:
C. elegans L1 larva 80S ribosome class 3
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17245:
C. elegans L1 larva 80S ribosome class 4
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17246:
C. elegans L1 larva body wall muscle tomogram
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17247:
C. elegans L1 larva ventral pharyngeal periphery tomogram
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17248:
Tomogram of the nucleus of a C. elegans L1 larva
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-18186:
C. elegans L1 larva
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Klebl DP, Schneider J, Beck F, Plitzko JM

EMDB-18187:
Focused refinment of 11-protofilament microtubule from C. elegans
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Klebl DP, Schneider J, Beck F, Plitzko JM

EMDB-17187:
48-nm repeat of the native axonemal doublet microtubule from bovine sperm
Method: single particle / : Leung MR, Zeng J, Zhang R, Zeev-Ben-Mordehai T

PDB-8otz:
48-nm repeat of the native axonemal doublet microtubule from bovine sperm
Method: single particle / : Leung MR, Zeng J, Zhang R, Zeev-Ben-Mordehai T

EMDB-36048:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36049:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36050:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36051:
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36052:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36053:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36055:
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7t:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7u:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7v:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7w:
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7x:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7y:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j80:
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-41614:
The Capsid of Canine Minute Virus
Method: single particle / : Velez M, Mietzsch M, McKenna R, Afione S, Zeher A, Huang R, Chiorini J

EMDB-41615:
The Capsid of Porcine Bocavirus 1
Method: single particle / : Velez M, Mietzsch M, McKenna R, Afione S, Zeher A, Huang R, Chiorini J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more