[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 59 items for (author: chang & wh)

EMDB-61131:
Cryo-EM structure of aPlexinA1-19-43 Fab in complex with PlexinA1 dimer
Method: single particle / : Tian H, Fung CP

EMDB-70158:
In-situ structure of the injectisome of Shigella flexneri with needle from mxiG linker mutant with three EAAAR motifs
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-70160:
In-situ structure of the injectisome of Shigella flexneri without needle from mxiG linker mutant with three EAAAR motifs
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-70161:
In-situ structure of the injectisome of Shigella flexneri without needle from mxiG linker deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-70162:
In-situ structure of the injectisome of Shigella flexneri with needle from mxiG linker deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-70165:
In-situ structure of the injectisome of Shigella flexneri with needle from mxiG linker deletion 111-124 mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-70166:
In-situ structure of the injectisome of Shigella flexneri without needle from mxiG linker deletion 111-124 mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-43189:
Translating 80S rabbit ribosome stalled by emetine with eEF2
Method: single particle / : Murray J, Shao S

PDB-8vft:
Translating 80S rabbit ribosome stalled by emetine with eEF2
Method: single particle / : Murray J, Shao S

EMDB-38153:
Immunoglobulin (IgG) reconstruction using phase plate single-particle cryo-EM
Method: single particle / : Lin HH, Wang CH, Wu YM, Tu IP, Chang WH

EMDB-38154:
Fab domain of Immunoglobulin (IgG) reconstruction using phase plate single-particle cryo-EM
Method: single particle / : Lin HH, Wang CH, Wu YM, Tu IP, Chang WH

EMDB-38155:
Fab domain of Immunoglobulin (IgG) reconstruction using conventional single-particle cryo-EM
Method: single particle / : Lin HH, Wang CH, Wu YM, Tu IP, Chang WH

EMDB-39076:
ATAT-2 bound MEC-12/MEC-7 microtubule
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

EMDB-39100:
ATAT-2 bound MEC-12/MEC-7 microtubule without acetyl-CoA
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

EMDB-39102:
ATAT-2 bound K40Q MEC-12/MEC-7 microtubule
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

EMDB-39105:
ATAT-2 bound K40R MEC-12/MEC-7 microtubule
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

EMDB-39212:
Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH8.0 (3.23A)
Method: single particle / : Wang CH, Chang WH

EMDB-39213:
Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH6.5 (2.82A)
Method: single particle / : Wang CH, Chang WH

EMDB-39214:
Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH5.0 (3.52A)
Method: single particle / : Wang CH, Chang WH

EMDB-39215:
Cryo-EM structure of Dragon Grouper nervous necrosis virion at pH6.5 (3.12A)
Method: single particle / : Wang CH, Chang WH

EMDB-39217:
Cryo-EM structure of Dragon Grouper nervous necrosis virion at pH5.0 (4.36A)
Method: single particle / : Wang CH, Chang WH

EMDB-36800:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36801:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state, focused refined on KtrA octamer
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36802:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state, focused refined on KtrB dimer
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36803:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of MgCl2
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36804:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-38477:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, vertical C2 symmetry axis
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-38478:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, C1 symmetry
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-25524:
Reconstruction of full-length Prex-1 (PtdIns(3,4,5)P3-dependent Rac Exchanger 1)
Method: single particle / : Lupton CJ, Bayly-Jones C

EMDB-25525:
Localised reconstruction of the N-terminal half of P-Rex1 (PI(3,4,5)P3-dependent Rac Exchanger 1)
Method: single particle / : Lupton CJ, Bayly-Jones C, Ellisdon AM

EMDB-25526:
Localised reconstruction of the C-terminal half of P-Rex 1 (PI(3,4,5)P3-dependent Rac Exchanger 1)
Method: single particle / : Lupton CJ, Bayly-Jones C, Ellisdon AM

PDB-7syf:
Reconstruction of full-length Prex-1 (PtdIns(3,4,5)P3-dependent Rac Exchanger 1)
Method: single particle / : Lupton CJ, Bayly-Jones C, Ellisdon AM

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-31326:
CryoEM structure of particulate methane monooxygenase associated with Cu(I)
Method: single particle / : Chang WH, Lin HH, Huang SH, Chung SC

EMDB-31327:
CryoEM structure of particulate methane monooxygenase associated with Cu(I) (form 1)
Method: single particle / : Chang WH, Lin HH, Huang SH, Chung SC

EMDB-31325:
cryoEM structure of particulate methane monooxygenase associated with Cu(I)
Method: single particle / : Chang WH, Lin HH

EMDB-23440:
Shigella Pod
Method: subtomogram averaging / : Liu J, Tachiyama S, Carroll BL

EMDB-30311:
Human DMC1 pre-synaptic complexes
Method: helical / : Luo SC, Yeh HY, Chi P, Ho MC, Tsai MD

EMDB-30308:
Human DMC1 post-synaptic complexes
Method: helical / : Luo SC, Yeh HY, Chi P, Ho MC, Tsai MD

EMDB-30309:
Human DMC1 post-synaptic complexes with mismatched dsDNA
Method: helical / : Luo SC, Yeh HY, Chi P, Ho MC, Tsai MD

EMDB-30310:
Human RAD51 post-synaptic complexes mutant (V273P, D274G)
Method: helical / : Chi HY, Ho MC, Tsai MD, Luo SC, Yeh HY

EMDB-30366:
Human DMC1 Q244M mutant of the post-synaptic complexes
Method: helical / : Chi HY, Ho MC, Tsai MD, Luo SC, Yeh HY

EMDB-9705:
Cryo-EM structure of giant freshwater prawn Macrobrachium rosenbergii extra small virus (XSV) VLP
Method: single particle / : Wang CH, Lin HH, Wu YY, Chang WH

EMDB-9706:
Cryo-EM structure of giant freshwater prawn Macrobrachium rosenbergii nodavirus (MrNV) semi-empty VLP
Method: single particle / : Wang CH, Lin HH, Wu YY, Chang WH

EMDB-9707:
Cryo-EM structure of giant freshwater prawn Macrobrachium rosenbergii nodavirus (MrNV) full VLP
Method: single particle / : Wang CH, Lin HH, Wu YY, Chang WH

EMDB-9328:
Pre-fusion protein gB revealed on human cytomegalovirus by cryo electron tomography with Volta phase plate
Method: subtomogram averaging / : Zhu S, Jiayan Z

EMDB-9329:
Post-fusion protein gB revealed on human cytomegalovirus by cryo electron tomography with Volta phase plate
Method: subtomogram averaging / : Zhu S, Jiayan Z

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more