[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 133 items for (author: beckert & b)

EMDB-18950:
70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
Method: single particle / : Koller TO, Wilson DN

EMDB-19004:
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Method: single particle / : Koller TO, Wilson DN

PDB-8r6c:
70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
Method: single particle / : Koller TO, Wilson DN

PDB-8r8m:
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Method: single particle / : Koller TO, Wilson DN

EMDB-50296:
70S Escherichia coli ribosome with P-site initiatior tRNA.
Method: single particle / : Koller TO, Wilson DN

PDB-9fbv:
70S Escherichia coli ribosome with P-site initiatior tRNA.
Method: single particle / : Koller TO, Wilson DN

EMDB-19638:
YlmH bound to PtRNA-50S
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

EMDB-19641:
YlmH bound to stalled 50S subunits with RqcH and PtRNA
Method: single particle / : Paternoga H, Wilson DN

PDB-8s1p:
YlmH bound to PtRNA-50S
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

PDB-8s1u:
YlmH bound to stalled 50S subunits with RqcH and PtRNA
Method: single particle / : Paternoga H, Wilson DN

EMDB-18320:
E. coli ApdP-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

EMDB-18332:
B. subtilis ApdA-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

EMDB-18340:
ApdP-SRC with P-tRNA only
Method: single particle / : Morici M, Wilson DN

EMDB-18341:
ApdA-SRC with P-tRNA only
Method: single particle / : Morici M, Wilson DN

PDB-8qbt:
E. coli ApdP-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

PDB-8qcq:
B. subtilis ApdA-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

EMDB-16595:
Rnase R bound to a 30S degradation intermediate (main state)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

EMDB-16596:
Rnase R bound to a 30S degradation intermediate (state II)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

EMDB-16605:
Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

EMDB-16606:
Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

EMDB-16607:
Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

PDB-8cdu:
Rnase R bound to a 30S degradation intermediate (main state)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

PDB-8cdv:
Rnase R bound to a 30S degradation intermediate (state II)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

PDB-8cec:
Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

PDB-8ced:
Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

PDB-8cee:
Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

EMDB-16520:
Omadacycline and spectinomycin bound to the 30S ribosomal subunit head
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Wilson DN

EMDB-16620:
Eravacycline bound to the 30S head
Method: single particle / : Paternoga H, Koller TO, Beckert B, Wilson DN

EMDB-16652:
Tiamulin bound to the 50S subunit
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Novacek J, Wilson DN

PDB-8ca7:
Omadacycline and spectinomycin bound to the 30S ribosomal subunit head
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Wilson DN

PDB-8cf8:
Eravacycline bound to the 30S head
Method: single particle / : Paternoga H, Koller TO, Beckert B, Wilson DN

PDB-8cgv:
Tiamulin bound to the 50S subunit
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Novacek J, Wilson DN

EMDB-16526:
Streptomycin and Hygromycin B bound to the 30S body
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Novacek J, Wilson DN

EMDB-16530:
Evernimicin bound to the 50S subunit
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Novacek J, Wilson DN

EMDB-16536:
empty 30S head
Method: single particle / : Paternoga H, Beckert B, Wilson DN

EMDB-16613:
Retapamulin and Capreomycin bound to the 50S subunit
Method: single particle / : Paternoga H, Beckert B, Wilson DN

EMDB-16615:
Tetracycline bound to the 30S head
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Beckert B, Wilson DN

EMDB-16641:
Clindamycin bound to the 50S subunit
Method: single particle / : Paternoga H, Koller TO, Beckert B, Wilson DN

EMDB-16644:
Pentacycline TP038 bound to the 30S head
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Novacek J, Wilson DN

EMDB-16645:
Streptomycin bound to the 30S body
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Beckert B, Wilson DN

EMDB-16650:
Apramycin bound to the 30S body
Method: single particle / : Paternoga H, Koller TO, Beckert B, Wilson DN

EMDB-16651:
Gentamicin bound to the 30S body
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Novacek J, Wilson DN

PDB-8cai:
Streptomycin and Hygromycin B bound to the 30S body
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Novacek J, Wilson DN

PDB-8cam:
Evernimicin bound to the 50S subunit
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Novacek J, Wilson DN

PDB-8caz:
empty 30S head
Method: single particle / : Paternoga H, Beckert B, Wilson DN

PDB-8ceu:
Retapamulin and Capreomycin bound to the 50S subunit
Method: single particle / : Paternoga H, Beckert B, Wilson DN

PDB-8cf1:
Tetracycline bound to the 30S head
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Beckert B, Wilson DN

PDB-8cgd:
Clindamycin bound to the 50S subunit
Method: single particle / : Paternoga H, Koller TO, Beckert B, Wilson DN

PDB-8cgi:
Pentacycline TP038 bound to the 30S head
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Novacek J, Wilson DN

PDB-8cgj:
Streptomycin bound to the 30S body
Method: single particle / : Paternoga H, Crowe-McAuliffe C, Beckert B, Wilson DN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more