[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 109 items for (author: bassi & r)

EMDB-63096:
The structure of the Lhcb8-CP47 from Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

EMDB-63097:
The structure of Lhcb8-LHCII-CP26 from Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

EMDB-63098:
The consensus map of the Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

EMDB-63163:
The structure of Lhcb4.1-LHCII-CP26 from Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

EMDB-63164:
The structure of the CS from Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

EMDB-63165:
The structure of the Lhcb4.1-CP47 from Lhcb4.1-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

EMDB-63166:
The consensus map of the Lhcb4.1-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

EMDB-63167:
Cryo-EM structure of Lhcb4.1-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

EMDB-63168:
The structure of Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

PDB-9lk4:
Cryo-EM structure of Lhcb4.1-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

PDB-9lk5:
The structure of Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Method: single particle / : Zhou Q, Caferri R, Shan JY, Amelii A, Bassi R, Liu ZF

EMDB-48263:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-48288:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

EMDB-48289:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mgy:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mie:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

PDB-9mig:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-46855:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

PDB-9dh3:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

EMDB-51634:
PfMSP3 in complex with mAb MP3.01
Method: single particle / : Bjoernsson KH, Barfod L, Ward AB

EMDB-50503:
Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6
Method: single particle / : Bjoernsson KH, Walker MR, Raghavan SSR, Ward AB, Barfod LK

PDB-9fjk:
Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6
Method: single particle / : Bjoernsson KH, Walker MR, Raghavan SSR, Ward AB, Barfod LK

EMDB-17924:
Cryo-EM structure of human Elp123 in complex with tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

EMDB-17925:
Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

EMDB-17926:
Cryo-EM structure of human Elp123 in complex with tRNA, S-ethyl-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

EMDB-17927:
Cryo-EM structure of human Elp123 in complex with tRNA, desulpho-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

PDB-8ptx:
Cryo-EM structure of human Elp123 in complex with tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

PDB-8pty:
Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

PDB-8ptz:
Cryo-EM structure of human Elp123 in complex with tRNA, S-ethyl-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

PDB-8pu0:
Cryo-EM structure of human Elp123 in complex with tRNA, desulpho-CoA, 5'-deoxyadenosine and methionine
Method: single particle / : Abbassi N, Jaciuk M, Lin TY, Glatt S

EMDB-16441:
Omicron B.1.1.529 2 RBD up conformation
Method: single particle / : Raghavan SSR, Walker MR, Salanti A, Barfod LK, Wang KT

PDB-8c5r:
Omicron B.1.1.529 2 RBD up conformation
Method: single particle / : Raghavan SSR, Walker MR, Salanti A, Barfod LK, Wang KT

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-35545:
Cryo-EM structure of PI3Kalpha in complex with compound 17
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

PDB-8ils:
Cryo-EM structure of PI3Kalpha in complex with compound 17
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

EMDB-35547:
Cryo-EM structure of PI3Kalpha in complex with compound 18
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

PDB-8ilv:
Cryo-EM structure of PI3Kalpha in complex with compound 18
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

EMDB-35543:
Cryo-EM structure of PI3Kalpha in complex with compound 16
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

PDB-8ilr:
Cryo-EM structure of PI3Kalpha in complex with compound 16
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

EMDB-15622:
Cryo-EM structure of yeast Elongator complex
Method: single particle / : Jaciuk M, Scherf D, Kaszuba K, Gaik M, Koscielniak A, Krutyholowa R, Rawski M, Indyka P, Biela A, Dobosz D, Lin TY, Abbassi N, Hammermeister A, Chramiec-Glabik A, Kosinski J, Schaffrath R, Glatt S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more