[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,161 items for (author: ali & s)

EMDB-75887:
SARS-CoV-2 Omicron BA.4 RBD in complex with Omi32 Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-75889:
SARS-CoV-2 Omicron BA.4 RBD in complex with Omi32 germline Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-75891:
SARS-CoV-2 Omicron BA.1 RBD in complex with Omi32 germline Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-75892:
Omi32 Fab in complex with LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-75893:
Omi32 germline Fab in complex with LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11ol:
SARS-CoV-2 Omicron BA.4 RBD in complex with Omi32 Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11oo:
SARS-CoV-2 Omicron BA.4 RBD in complex with Omi32 germline Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11oq:
SARS-CoV-2 Omicron BA.1 RBD in complex with Omi32 germline Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11or:
Omi32 Fab in complex with LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11ou:
Omi32 germline Fab in complex with LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-56682:
In situ ribosome structure from environmental sample of Pseudo-nitzschia
Method: subtomogram averaging / : Leisch N, Pyle E

EMDB-75897:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75900:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-51861:
dCas9 bound to on-target EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

EMDB-51862:
dCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

EMDB-51863:
dCas9 bound to off-target 2 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

EMDB-51864:
wtCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

PDB-9h4j:
dCas9 bound to on-target EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

PDB-9h4k:
dCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

PDB-9h4l:
dCas9 bound to off-target 2 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

PDB-9h4m:
wtCas9 bound to off-target 1 EMX1-1 (-)SC DNA minicircle
Method: single particle / : Smith QM, Rueda D

EMDB-75641:
Full-length BG505 HIV-1 Env expressed in VLP
Method: subtomogram averaging / : Duquette M, Villa E

EMDB-53531:
Cryo-EM structure of the complex CDK16:CCNY:14-3-3
Method: single particle / : Kosek D, Kohoutova K, Obsilova V, Obsil T

EMDB-53533:
Cryo-EM structure of the complex CCNY:14-3-3
Method: single particle / : Kosek D, Kohoutova K, Obsilova V, Obsil T

PDB-9r2i:
Cryo-EM structure of the complex CDK16:CCNY:14-3-3
Method: single particle / : Kosek D, Kohoutova K, Obsilova V, Obsil T

PDB-9r2n:
Cryo-EM structure of the complex CCNY:14-3-3
Method: single particle / : Kosek D, Kohoutova K, Obsilova V, Obsil T

EMDB-72906:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-71358:
NTSR1-Gi-NTS(8-13) Complex in the Canonical, AHD Open State (C-Open-Apo)
Method: single particle / : Robertson MJ

EMDB-71359:
NTSR1-Gi-NTS(8-13) Complex in the Non-Canonical, AHD Open State (NC-Open-Apo)
Method: single particle / : Robertson MJ

EMDB-71360:
NTSR1-Gi-NTS(8-13) Complex in the Canonical, AHD Closed State (C-Closed-Apo)
Method: single particle / : Robertson MJ

EMDB-71361:
NTSR1-Gi-NTS(8-13), GTP-bound Complex in the Canonical, AHD Open State (C-Open-GTP)
Method: single particle / : Robertson MJ

EMDB-71362:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State (C-Closed-GTP)
Method: single particle / : Robertson MJ

EMDB-71363:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Open State (NC-Open-GTP)
Method: single particle / : Robertson MJ

EMDB-71364:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Closed State (NC-Closed-GTP)
Method: single particle / : Robertson MJ

EMDB-71365:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State, 3DVA Sorted (C-Closed*-GTP)
Method: single particle / : Robertson MJ

EMDB-71366:
NTSR1-G11-NTS(8-13) Complex in the Canonical, AHD Open State (C-Open-Apo)
Method: single particle / : Robertson MJ

EMDB-71367:
NTSR1-G11-NTS(8-13) Complex in the Canonical, AHD Partially Closed State (C-P-Closed-Apo)
Method: single particle / : Robertson MJ

EMDB-71368:
NTSR1-G11-NTS(8-13) Complex in the Non-Canonical, AHD Open State (NC-Open-Apo)
Method: single particle / : Robertson MJ

EMDB-71369:
NTSR1-G11-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State 3DVA Separated 1 (C-Closed-GTP)
Method: single particle / : Robertson MJ

EMDB-71370:
NTSR1-G11-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State 3DVA Separated 2 (C-Closed*-GTP)
Method: single particle / : Robertson MJ

EMDB-74080:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State (C-Closed-GTP), MSP1D1 Nanodisc
Method: single particle / : Robertson MJ

EMDB-74081:
NTSR1-Gi-NTS(8-13), GTP-bound Complex in the Canonical, AHD Open State (C-Open-GTP), MSP1D1
Method: single particle / : Robertson MJ

PDB-9p7z:
NTSR1-Gi-NTS(8-13) Complex in the Canonical, AHD Open State (C-Open-Apo)
Method: single particle / : Robertson MJ

PDB-9p80:
NTSR1-Gi-NTS(8-13) Complex in the Non-Canonical, AHD Open State (NC-Open-Apo)
Method: single particle / : Robertson MJ

PDB-9p81:
NTSR1-Gi-NTS(8-13), GTP-bound Complex in the Canonical, AHD Open State (C-Open-GTP)
Method: single particle / : Robertson MJ

PDB-9p82:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State (C-Closed-GTP)
Method: single particle / : Robertson MJ

PDB-9p83:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Open State (NC-Open-GTP)
Method: single particle / : Robertson MJ

PDB-9p84:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Closed State (NC-Closed-GTP)
Method: single particle / : Robertson MJ

PDB-9p85:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State, 3DVA Sorted (C-Closed*-GTP)
Method: single particle / : Robertson MJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more