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Showing all 46 items for (author: nakane & t)

EMDB-33349:
Cryo-EM structure of GroEL bound to unfolded substrate (UGT1A) at 2.8 Ang. resolution (Consensus Refinement)
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-33350:
Cryo-EM structure of double occupied ring (DOR) of GroEL-UGT1A complex at 2.7 Ang. resolution
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-33351:
Cryo-EM structure of single empty ring 2 (SER2) of GroEL-UGT1A complex at 3.2 Ang. resolution
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-33352:
Cryo-EM structure of occupied ring subunit 4 (OR4) of GroEL complexed with polyalanine model of UGT1A from GroEL-UGT1A double occupied ring complex
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-33353:
Cryo-EM structure of empty ring subunit 1 (ER1) from single empty ring of GroEL-UGT1A complex
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-33354:
Cryo-EM structure of empty ring subunit 2 (ER2) from GroEL-UGT1A single empty ring complex
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-33355:
Cryo-EM structure of occupied ring subunit 1 (OR1) of GroEL from GroEL-UGT1A double occupied ring complex
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-33356:
Cryo-EM structure of occupied ring subunit 2 (OR2) of GroEL from GroEL-UGT1A double occupied ring complex
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-33357:
Cryo-EM structure of occupied ring subunit 3 (OR3) of GroEL from GroEL-UGT1A double occupied ring complex
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-33358:
Cryo-EM structure of occupied ring subunit 4 (OR4) of GroEL from GroEL-UGT1A double occupied ring complex
Method: single particle / : Stapleton K, Takagi J, Mizohata E

EMDB-11657:
CryoEM structure of a human gamma-aminobutyric acid receptor, the GABA(A)R-beta3 homopentamer, in complex with histamine and megabody Mb25 in lipid nanodisc
Method: single particle / : Nakane T, Kotecha A, Sente A, Yamashita K, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW

PDB-7a5v:
CryoEM structure of a human gamma-aminobutyric acid receptor, the GABA(A)R-beta3 homopentamer, in complex with histamine and megabody Mb25 in lipid nanodisc
Method: single particle / : Nakane T, Kotecha A, Sente A, Yamashita K, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW

EMDB-11638:
Cryo-EM structure of mouse heavy-chain apoferritin at 1.22 A
Method: single particle / : Nakane T, Kotecha A, Sente A, Yamashita K, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW

PDB-7a4m:
Cryo-EM structure of mouse heavy-chain apoferritin at 1.22 A
Method: single particle / : Nakane T, Kotecha A, Sente A, Yamashita K, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW

EMDB-11493:
Subtomogram averaging of SARS-CoV-2 Spike Protein from unconcentrated virions: consensus structure of prefusion S trimers
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11494:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (3 closed RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11495:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (1 open RBD)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11496:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (2 open RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11497:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11498:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 2 Closed + 1 Weak RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

PDB-6zwv:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-10944:
Head segment of the S.cerevisiae condensin holocomplex in presence of ATP
Method: single particle / : Merkel F, Haering CH, Hassler M, Lee BG, Lowe J

PDB-6yvd:
Head segment of the S.cerevisiae condensin holocomplex in presence of ATP
Method: single particle / : Merkel F, Haering CH, Hassler M, Lee BG, Lowe J

EMDB-10951:
Condensin complex from S.cerevisiae ATP-free apo non-engaged state: overall map
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10952:
Condensin complex from S.cerevisiae ATP-free apo bridged state: focused refinement on head segment
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10964:
Rod-shaped arm segment of the S.cerevisiae condensin complex in presence of ATP
Method: single particle / : Merkel F, Haering CH, Hassler M, Lowe J, Lee BG

PDB-6yvu:
Condensin complex from S.cerevisiae ATP-free apo non-engaged state
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Aragon L, Haering CH, Lowe J

PDB-6yvv:
Condensin complex from S.cerevisiae ATP-free apo bridged state
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10947:
Condensin complex from S.cerevisiae ATP-free apo non-engaged state: focused refinement on arm segment
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10948:
Condensin complex from S.cerevisiae ATP-free apo non-engaged state: focused refinement on head segment
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10953:
Condensin complex from S.cerevisiae ATP-free apo bridged state: focused refinement on arm segment
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10954:
Condensin complex from S.cerevisiae ATP-free apo bridged state: overall map
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-20645:
MicroED structure of a FIB-milled CypA Crystal
Method: electron crystallography / : Wolff AM, Martynowycz MW, Zhao W, Gonen T, Fraser JS, Thompson MC

PDB-6u5g:
MicroED structure of a FIB-milled CypA Crystal
Method: electron crystallography / : Wolff AM, Martynowycz MW, Zhao W, Gonen T, Fraser JS, Thompson MC

EMDB-0893:
Detailed structures of the gliding machinery observed by ECT
Method: electron tomography / : Kawamoto A, Kato T, Namba K

EMDB-9849:
LAT1-CD98hc complex bound to MEM-108 Fab
Method: single particle / : Lee Y, Nishizawa T, Kusakizako T, Oda K, Ishitani R, Nakane T, Nureki O

EMDB-9850:
CD98hc extracellular domain bound to HBJ127 Fab and MEM-108 Fab
Method: single particle / : Lee Y, Nishizawa T, Kusakizako T, Oda K, Ishitani R, Yokoyama T, Nakane T, Shirouzu M, Nureki O

PDB-6jmq:
LAT1-CD98hc complex bound to MEM-108 Fab
Method: single particle / : Lee Y, Nishizawa T, Kusakizako T, Oda K, Ishitani R, Nakane T, Nureki O

PDB-6jmr:
CD98hc extracellular domain bound to HBJ127 Fab and MEM-108 Fab
Method: single particle / : Lee Y, Nishizawa T, Kusakizako T, Oda K, Ishitani R, Yokoyama T, Nakane T, Shirouzu M, Nureki O

EMDB-9865:
The 1.54 A resolution structure of apoferritin by CRYOARM300 with Cold-FEG
Method: single particle / : Kato T, Nakane T, Makino F, Terahara N, Yonekura K, Namba K

EMDB-0153:
RELION-3.0 reconstruction of beta-galactosidase particles in EMPIAR-10061
Method: single particle / : Zivanov J, Nakane T, Scheres SHW

EMDB-0263:
Horse spleen apo-ferritin with beam tilt correction in RELION-3.0
Method: single particle / : Zivanov J, Nakane T, Hagen WJH, Scheres SHW

EMDB-6952:
Structure of the human homo-hexameric LRRC8A channel at 4.25 Angstroms
Method: single particle / : Kasuya G, Nakane T, Yokoyama T, Shirouzu M, Ishitani R, Nureki O

PDB-5zsu:
Structure of the human homo-hexameric LRRC8A channel at 4.25 Angstroms
Method: single particle / : Kasuya G, Nakane T, Yokoyama T, Shirouzu M, Ishitani R, Nureki O

EMDB-0144:
Human apo-ferritin reconstructed in RELION-3.0
Method: single particle / : Zivanov J, Nakane T, Hagen WJH, Scheres SHW

EMDB-0152:
RELION-3.0 reconstruction of influenza hemagglutinin (HA) trimer using particles from micrographs tilted at 40 degrees in EMPIAR-10097
Method: single particle / : Zivanov J, Nakane T, Scheres SHW

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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