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5FDJ
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BU of 5fdj by Molmil
Hen egg lysozyme at room temperature solved from datasets acquired by ultrasonic acoustic levitation method and processed by CrystFEL
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Tsujino, S, Tomizaki, T.
Deposit date:2015-12-16
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ultrasonic acoustic levitation for fast frame rate X-ray protein crystallography at room temperature.
Sci Rep, 6, 2016
5FEL
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BU of 5fel by Molmil
Hen egg lysozyme at room temperature solved from dataset acquired by oscillation method
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Tsujino, S, Tomizaki, T.
Deposit date:2015-12-17
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ultrasonic acoustic levitation for fast frame rate X-ray protein crystallography at room temperature.
Sci Rep, 6, 2016
5FEK
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BU of 5fek by Molmil
Hen egg lysozyme at room temperature solved from 3600 diffraction images acquired by ultrasonic acoustic levitation method and processed by CrystFEL
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Tsujino, S, Tomizaki, T.
Deposit date:2015-12-17
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ultrasonic acoustic levitation for fast frame rate X-ray protein crystallography at room temperature.
Sci Rep, 6, 2016
8IX6
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BU of 8ix6 by Molmil
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Bradyrhizobium sp. WSM3983
Descriptor: Aldolase, NICKEL (II) ION, SULFATE ION
Authors:Tsujino, S, Yamada, Y, Fujiwara, T.
Deposit date:2023-03-31
Release date:2024-04-03
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural and functional analysis of pyruvic oxime dioxygenase, a key enzyme of heterotrophic nitrification
To Be Published
8IQA
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BU of 8iqa by Molmil
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Alcaligenes faecalis deleted N-terminal 18 residues
Descriptor: Aldolase, NICKEL (II) ION
Authors:Tsujino, S, Yamada, Y, Fujiwara, T.
Deposit date:2023-03-16
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Structural and functional analysis of pyruvic oxime dioxygenase, a key enzyme of heterotrophic nitrification
To Be Published
8IL8
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BU of 8il8 by Molmil
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Alcaligenes faecalis
Descriptor: Aldolase, FE (II) ION
Authors:Tsujino, S, Yamada, Y, Fujiwara, T.
Deposit date:2023-03-03
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.769 Å)
Cite:Structural and functional analysis of pyruvic oxime dioxygenase, a key enzyme of heterotrophic nitrification
To Be Published
7WGU
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BU of 7wgu by Molmil
Crystal structure of metal-binding protein EfeO from Escherichia coli
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Iron uptake system protein EfeO, ...
Authors:Nakatsuji, S, Takase, R, Mikami, B, Hashimoto, W.
Deposit date:2021-12-29
Release date:2022-12-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of EfeB and EfeO in a bacterial siderophore-independent iron transport system
Biochem.Biophys.Res.Commun., 594, 2022
7YRU
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BU of 7yru by Molmil
ALK2 antibody complex
Descriptor: Activin receptor type-1, antibody heavy chain, antibody light chain
Authors:Kawaguchi, Y, Nakamura, K, Suzuki, M, Tsuji, S, Katagiri, T.
Deposit date:2022-08-10
Release date:2023-05-17
Last modified:2023-06-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A blocking monoclonal antibody reveals dimerization of intracellular domains of ALK2 associated with genetic disorders.
Nat Commun, 14, 2023
1M10
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BU of 1m10 by Molmil
Crystal structure of the complex of Glycoprotein Ib alpha and the von Willebrand Factor A1 Domain
Descriptor: Glycoprotein Ib alpha, von Willebrand Factor
Authors:Huizinga, E.G, Tsuji, S, Romijn, R.A.P, Schiphorst, M.E, de Groot, P.G, Sixma, J.J, Gros, P.
Deposit date:2002-06-16
Release date:2002-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of glycoprotein Ibalpha and its complex with von Willebrand factor A1 domain.
Science, 297, 2002
1M0Z
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BU of 1m0z by Molmil
Crystal Structure of the von Willebrand Factor Binding Domain of Glycoprotein Ib alpha
Descriptor: Glycoprotein Ib alpha
Authors:Huizinga, E.G, Tsuji, S, Romijn, R.A.P, Schiphorst, M.E, de Groot, P.G, Sixma, J.J, Gros, P.
Deposit date:2002-06-16
Release date:2002-08-28
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structures of glycoprotein Ibalpha and its complex with von Willebrand factor A1 domain.
Science, 297, 2002
3ABG
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BU of 3abg by Molmil
X-ray Crystal Analysis of Bilirubin Oxidase from Myrothecium verrucaria at 2.3 angstrom Resolution using a Twin Crystal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Bilirubin oxidase, COPPER (II) ION, ...
Authors:Mizutani, K, Toyoda, M, Sagara, K, Takahashi, N, Sato, A, Kamitaka, Y, Tsujimura, S, Nakanishi, Y, Sugiura, T, Yamaguchi, S, Kano, K, Mikami, B.
Deposit date:2009-12-10
Release date:2010-08-18
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray analysis of bilirubin oxidase from Myrothecium verrucaria at 2.3 A resolution using a twinned crystal
Acta Crystallogr.,Sect.F, 66, 2010
8XLM
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BU of 8xlm by Molmil
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Nomai, T, Anraku, Y, Kita, S, Hashiguchi, T, Maenaka, K.
Deposit date:2023-12-26
Release date:2024-05-01
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Virological characteristics of the SARS-CoV-2 Omicron EG.5.1 variant.
Microbiol Immunol, 2024
8XLN
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BU of 8xln by Molmil
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Nomai, T, Anraku, Y, Kita, S, Hashiguchi, T, Maenaka, K.
Deposit date:2023-12-26
Release date:2024-05-01
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Virological characteristics of the SARS-CoV-2 Omicron EG.5.1 variant.
Microbiol Immunol, 2024
8WMD
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BU of 8wmd by Molmil
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Nomai, T, Anraku, Y, Kita, S, Hashiguchi, T, Maenaka, K.
Deposit date:2023-10-03
Release date:2024-04-24
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Virological characteristics of the SARS-CoV-2 Omicron EG.5.1 variant.
Microbiol Immunol, 2024
8WMF
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BU of 8wmf by Molmil
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Nomai, T, Anraku, Y, Kita, S, Hashiguchi, T, Maenaka, K.
Deposit date:2023-10-03
Release date:2024-04-24
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Virological characteristics of the SARS-CoV-2 Omicron EG.5.1 variant.
Microbiol Immunol, 2024
8JJE
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BU of 8jje by Molmil
RBD of SARS-CoV2 spike protein with ACE2 decoy
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Kishikawa, J, Hirose, M, Kato, T, Okamoto, T.
Deposit date:2023-05-30
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:An inhaled ACE2 decoy confers protection against SARS-CoV-2 infection in preclinical models.
Sci Transl Med, 15, 2023
2GD3
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BU of 2gd3 by Molmil
NMR structure of S14G-humanin in 30% TFE solution
Descriptor: Humanin
Authors:Benaki, D, Zikos, C, Evangelou, A, Livaniou, E, Vlassi, M, Mikros, E, Pelecanou, M.
Deposit date:2006-03-15
Release date:2006-09-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of Ser14Gly-humanin, a potent rescue factor against neuronal cell death in Alzheimer's disease.
Biochem.Biophys.Res.Commun., 349, 2006
7DEN
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BU of 7den by Molmil
Crystal structure of P.aeruginosa LpxC in complex with inhibitor
Descriptor: 4-[(1~{R},5~{S})-6-[2-[4-[3-[[2-[(1~{S})-1-oxidanylethyl]imidazol-1-yl]methyl]-1,2-oxazol-5-yl]phenyl]ethynyl]-3-azabicyclo[3.1.0]hexan-3-yl]butanoic acid, UDP-3-O-acyl-N-acetylglucosamine deacetylase, ZINC ION
Authors:Mima, M, Ushiyama, F, Takashima, H.
Deposit date:2020-11-04
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Lead optimization of 2-hydroxymethyl imidazoles as non-hydroxamate LpxC inhibitors: Discovery of TP0586532.
Bioorg.Med.Chem., 30, 2020
7DEL
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BU of 7del by Molmil
Crystal structure of P.aeruginosa LpxC in complex with inhibitor
Descriptor: 3-[4-[2-[3-[[2-[(1~{S})-1-oxidanylethyl]imidazol-1-yl]methyl]-1,2-oxazol-5-yl]ethynyl]phenyl]propan-1-ol, UDP-3-O-acyl-N-acetylglucosamine deacetylase, ZINC ION
Authors:Mima, M, Ushiyama, F, Tanaka-Yamamoto, N.
Deposit date:2020-11-04
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Lead optimization of 2-hydroxymethyl imidazoles as non-hydroxamate LpxC inhibitors: Discovery of TP0586532.
Bioorg.Med.Chem., 30, 2020
7DEM
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BU of 7dem by Molmil
Crystal structure of P.aeruginosa LpxC in complex with inhibitor
Descriptor: 5-[4-[3-[[2-[(1~{S})-1-oxidanylethyl]imidazol-1-yl]methyl]-1,2-oxazol-5-yl]phenyl]pent-4-yn-1-ol, UDP-3-O-acyl-N-acetylglucosamine deacetylase, ZINC ION
Authors:Mima, M, Ushiyama, F, Matsuda, Y.
Deposit date:2020-11-04
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Lead optimization of 2-hydroxymethyl imidazoles as non-hydroxamate LpxC inhibitors: Discovery of TP0586532.
Bioorg.Med.Chem., 30, 2020
3ORN
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BU of 3orn by Molmil
Mitogen-activated protein kinase kinase 1 (MEK1) in complex with CH4987655 and MgAMP-PNP
Descriptor: 3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)-5-[(3-oxo-1,2-oxazinan-2-yl)methyl]benzamide, Dual specificity mitogen-activated protein kinase kinase 1, MAGNESIUM ION, ...
Authors:Lukacs, C.M, Janson, C, Schuck, V, Belunis, C.
Deposit date:2010-09-07
Release date:2011-03-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Design and synthesis of novel allosteric MEK inhibitor CH4987655 as an orally available anticancer agent.
Bioorg.Med.Chem.Lett., 21, 2011
3OS3
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BU of 3os3 by Molmil
Mitogen-activated protein kinase kinase 1 (MEK1) in complex with CH4858061 and MgATP
Descriptor: 2-[(4-ethynyl-2-fluorophenyl)amino]-3,4-difluoro-N-(2-hydroxyethoxy)-5-{[(2-hydroxyethoxy)imino]methyl}benzamide, ADENOSINE-5'-TRIPHOSPHATE, Dual specificity mitogen-activated protein kinase kinase 1, ...
Authors:Lukacs, C.M, Janson, C, Schuck, V, Belunis, C.
Deposit date:2010-09-08
Release date:2011-07-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Design and synthesis of novel allosteric MEK inhibitor CH4987655 as an orally available anticancer agent.
Bioorg.Med.Chem.Lett., 21, 2011
4E9S
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BU of 4e9s by Molmil
Multicopper Oxidase CueO (data5)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
4E9T
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BU of 4e9t by Molmil
Multicopper Oxidase CueO (data6)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007
4E9R
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BU of 4e9r by Molmil
Multicopper Oxidase CueO (data4)
Descriptor: ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2012-03-21
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site.
J.Mol.Biol., 373, 2007

 

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