1YKQ | | CRYSTAL STRUCTURE OF DIELS-ALDER RIBOZYME | | Descriptor: | Diels-Alder ribozyme, CADMIUM ION, MAGNESIUM ION | | Authors: | Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J. | | Deposit date: | 2005-01-18 | | Release date: | 2005-02-22 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (3.5 Å) | | Cite: | Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nat.Struct.Mol.Biol., 12, 2005
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1YKV | | CRYSTAL STRUCTURE OF THE DIELS-ALDER RIBOZYME COMPLEXED WITH THE PRODUCT OF THE REACTION BETWEEN N-PENTYLMALEIMIDE AND COVALENTLY ATTACHED 9-HYDROXYMETHYLANTHRACENE | | Descriptor: | Diels-Alder ribozyme, (3AS,9AS)-2-PENTYL-4-HYDROXYMETHYL-3A,4,9,9A-TETRAHYDRO-4,9[1',2']-BENZENO-1H-BENZ[F]ISOINDOLE-1,3(2H)-DIONE, MAGNESIUM ION | | Authors: | Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J. | | Deposit date: | 2005-01-18 | | Release date: | 2005-02-22 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (3.3 Å) | | Cite: | Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nat.Struct.Mol.Biol., 12, 2005
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1YLS | | CRYSTAL STRUCTURE OF SELENIUM-MODIFIED DIELS-ALDER RIBOZYME COMPLEXED WITH THE PRODUCT OF THE REACTION BETWEEN N-PENTYLMALEIMIDE AND COVALENTLY ATTACHED 9-HYDROXYMETHYLANTHRACENE | | Descriptor: | RNA Diels-Alder ribozyme, (3AS,9AS)-2-PENTYL-4-HYDROXYMETHYL-3A,4,9,9A-TETRAHYDRO-4,9[1',2']-BENZENO-1H-BENZ[F]ISOINDOLE-1,3(2H)-DIONE, MAGNESIUM ION | | Authors: | Serganov, A., Keiper, S., Malinina, L., Tereshko, V., Skripkin, E., Hobartner, C., Polonskaia, A., Phan, A.T., Wombacher, R., Micura, R., Dauter, Z., Jaschke, A., Patel, D.J. | | Deposit date: | 2005-01-19 | | Release date: | 2005-02-22 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nat.Struct.Mol.Biol., 12, 2005
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1Y26 | | A-RIBOSWITCH-ADENINE COMPLEX | | Descriptor: | Vibrio vulnificus A-riboswitch, MAGNESIUM ION, ADENINE | | Authors: | Serganov, A., Yuan, Y.R., Patel, D.J. | | Deposit date: | 2004-11-20 | | Release date: | 2004-12-28 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural Basis for Discriminative Regulation of Gene Expression by Adenine- and Guanine-Sensing mRNAs
Chem.Biol., 11, 2004
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1Y27 | | G-RIBOSWITCH-GUANINE COMPLEX | | Descriptor: | Bacillus subtilis xpt, HYPOPHOSPHITE, GUANOSINE-5'-MONOPHOSPHATE | | Authors: | Serganov, A., Yuan, Y.R., Patel, D.J. | | Deposit date: | 2004-11-20 | | Release date: | 2004-12-28 | | Last modified: | 2017-10-11 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Structural Basis for Discriminative Regulation of Gene Expression by Adenine- and Guanine-Sensing mRNAs
Chem.Biol., 11, 2004
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2GDI | |
4GXY | | RNA STRUCTURE | | Descriptor: | Adenosylcobalamin riboswitch, Adenosylcobalamin, IRIDIUM HEXAMMINE ION, ... | | Authors: | Serganov, A., Peselis, A. | | Deposit date: | 2012-09-04 | | Release date: | 2012-10-17 | | Last modified: | 2017-11-15 | | Method: | X-RAY DIFFRACTION (3.05 Å) | | Cite: | Structural insights into ligand binding and gene expression control by an adenosylcobalamin riboswitch.
Nat.Struct.Mol.Biol., 19, 2012
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2LA5 | | RNA DUPLEX-QUADRUPLEX JUNCTION COMPLEX WITH FMRP RGG PEPTIDE | | Descriptor: | RNA (36-MER), Fragile X mental retardation 1 protein | | Authors: | Phan, A., Kuryavyi, V., Darnell, J., Serganov, A., Majumdar, A., Ilin, S., Darnell, R., Patel, D. | | Deposit date: | 2011-03-03 | | Release date: | 2011-06-08 | | Last modified: | 2011-07-20 | | Method: | SOLUTION NMR | | Cite: | Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction.
Nat.Struct.Mol.Biol., 18, 2011
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1AB3 | | RIBOSOMAL PROTEIN S15 FROM THERMUS THERMOPHILUS, NMR, 26 STRUCTURES | | Descriptor: | RIBOSOMAL RNA BINDING PROTEIN S15 | | Authors: | Berglund, H., Rak, A., Serganov, A., Garber, M., Hard, T. | | Deposit date: | 1997-02-03 | | Release date: | 1997-04-01 | | Last modified: | 2011-07-13 | | Method: | SOLUTION NMR | | Cite: | Solution structure of the ribosomal RNA binding protein S15 from Thermus thermophilus.
Nat.Struct.Biol., 4, 1997
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1DK1 | | DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX | | Descriptor: | RRNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, MAGNESIUM ION, ... | | Authors: | Nikulin, A., Serganov, A., Ennifar, E., Tischenko, S., Nevskaya, N. | | Deposit date: | 1999-12-06 | | Release date: | 2000-04-02 | | Last modified: | 2018-01-31 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Crystal structure of the S15-rRNA complex.
Nat.Struct.Biol., 7, 2000
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1F7Y | | THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY | | Descriptor: | 16S RIBOSOMAL RNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, MAGNESIUM ION, ... | | Authors: | Ennifar, E., Nikouline, A., Serganov, A., Tishchenko, S., Nevskaya, N., Garber, M., Ehresmann, B., Ehresmann, C., Nikonov, S., Dumas, P. | | Deposit date: | 2000-06-28 | | Release date: | 2000-11-22 | | Last modified: | 2011-12-28 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | The crystal structure of UUCG tetraloop.
J.Mol.Biol., 304, 2000
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3SKI | | CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'-DEOXYGUANOSINE | | Descriptor: | RNA (68-MER), 2'-DEOXY-GUANOSINE, MAGNESIUM ION, ... | | Authors: | Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A. | | Deposit date: | 2011-06-22 | | Release date: | 2011-08-17 | | Last modified: | 2011-10-26 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
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3SKL | | CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'-DEOXYGUANOSINE, IRIDIUM HEXAMMINE SOAK | | Descriptor: | RNA (66-MER), 2'-DEOXY-GUANOSINE, MAGNESIUM ION, ... | | Authors: | Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A. | | Deposit date: | 2011-06-22 | | Release date: | 2011-08-17 | | Last modified: | 2011-10-26 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
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3SKR | | CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, COBALT HEXAMMINE SOAK | | Descriptor: | RNA (66-MER), 2'-DEOXY-GUANOSINE, COBALT HEXAMMINE(III), ... | | Authors: | Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A. | | Deposit date: | 2011-06-23 | | Release date: | 2011-08-17 | | Last modified: | 2011-10-26 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
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3SKT | | CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, MANGANESE SOAK | | Descriptor: | RNA (66-MER), 2'-DEOXY-GUANOSINE, MANGANESE (II) ION, ... | | Authors: | Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A. | | Deposit date: | 2011-06-23 | | Release date: | 2011-08-17 | | Last modified: | 2011-10-26 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
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3SKW | | CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, CESIUM SOAK | | Descriptor: | RNA (66-MER), 2'-DEOXY-GUANOSINE, CESIUM ION, ... | | Authors: | Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A. | | Deposit date: | 2011-06-23 | | Release date: | 2011-08-17 | | Last modified: | 2011-10-26 | | Method: | X-RAY DIFFRACTION (2.95 Å) | | Cite: | Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
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3SKZ | | CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO GUANOSINE | | Descriptor: | RNA (68-MER), GUANOSINE, MAGNESIUM ION, ... | | Authors: | Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A. | | Deposit date: | 2011-06-23 | | Release date: | 2011-08-17 | | Last modified: | 2011-10-26 | | Method: | X-RAY DIFFRACTION (2.605 Å) | | Cite: | Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
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3SLQ | | CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO GUANOSINE-5'-MONOPHOSPHATE | | Descriptor: | RNA (68-MER), GUANOSINE-5'-MONOPHOSPHATE, SULFATE ION, ... | | Authors: | Pikovskaya, O., Polonskaia, A., Patel, D.J., Serganov, A. | | Deposit date: | 2011-06-24 | | Release date: | 2011-08-17 | | Last modified: | 2011-10-26 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
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4QK8 | | THERMOANAEROBACTER PSEUDETHANOLICUS C-DI-AMP RIBOSWITCH | | Descriptor: | C-di-AMP riboswitch, (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MAGNESIUM ION, ... | | Authors: | Gao, A., Serganov, A. | | Deposit date: | 2014-06-05 | | Release date: | 2014-08-06 | | Last modified: | 2014-09-10 | | Method: | X-RAY DIFFRACTION (3.05 Å) | | Cite: | Structural insights into recognition of c-di-AMP by the ydaO riboswitch.
Nat.Chem.Biol., 10, 2014
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4QK9 | | THERMOVIRGA LIENII C-DI-AMP RIBOSWITCH | | Descriptor: | C-di-AMP riboswitch, (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MAGNESIUM ION | | Authors: | Gao, A., Serganov, A. | | Deposit date: | 2014-06-05 | | Release date: | 2014-08-06 | | Last modified: | 2014-09-10 | | Method: | X-RAY DIFFRACTION (3.05 Å) | | Cite: | Structural insights into recognition of c-di-AMP by the ydaO riboswitch.
Nat.Chem.Biol., 10, 2014
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4QKA | | C-DI-AMP RIBOSWITCH FROM THERMOANAEROBACTER PSEUDETHANOLICUS, IRIDIUM HEXAMINE SOAK | | Descriptor: | C-di-AMP riboswitch, (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MAGNESIUM ION, ... | | Authors: | Gao, A., Serganov, A. | | Deposit date: | 2014-06-05 | | Release date: | 2014-08-06 | | Last modified: | 2014-09-10 | | Method: | X-RAY DIFFRACTION (3.2 Å) | | Cite: | Structural insights into recognition of c-di-AMP by the ydaO riboswitch.
Nat.Chem.Biol., 10, 2014
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5DE5 | | CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN FMRP RGG MOTIF AND G-QUADRUPLEX RNA. | | Descriptor: | sc1, Fragile X mental retardation protein 1, POTASSIUM ION | | Authors: | Vasilyev, N., Polonskaia, A., Darnell, J.C., Darnell, R.B., Patel, D.J., Serganov, A. | | Deposit date: | 2015-08-25 | | Release date: | 2015-09-23 | | Last modified: | 2017-09-06 | | Method: | X-RAY DIFFRACTION (3.0011 Å) | | Cite: | Crystal structure reveals specific recognition of a G-quadruplex RNA by a beta-turn in the RGG motif of FMRP.
Proc.Natl.Acad.Sci.USA, 112, 2015
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5DE8 | | CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN FMRP RGG MOTIF AND G-QUADRUPLEX RNA, IRIDIUM HEXAMMINE BOUND FORM. | | Descriptor: | sc1, Fragile X mental retardation protein 1, POTASSIUM ION, ... | | Authors: | Vasilyev, N., Polonskaia, A., Darnell, J.C., Darnell, R.B., Patel, D.J., Serganov, A. | | Deposit date: | 2015-08-25 | | Release date: | 2015-09-23 | | Last modified: | 2017-09-06 | | Method: | X-RAY DIFFRACTION (3.1003 Å) | | Cite: | Crystal structure reveals specific recognition of a G-quadruplex RNA by a beta-turn in the RGG motif of FMRP.
Proc.Natl.Acad.Sci.USA, 112, 2015
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5DEA | | CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN FMRP RGG MOTIF AND G-QUADRUPLEX RNA, CESIUM BOUND FORM. | | Descriptor: | sc1, Fragile X mental retardation protein 1, POTASSIUM ION, ... | | Authors: | Vasilyev, N., Polonskaia, A., Darnell, J.C., Darnell, R.B., Patel, D.J., Serganov, A. | | Deposit date: | 2015-08-25 | | Release date: | 2015-09-23 | | Last modified: | 2017-09-06 | | Method: | X-RAY DIFFRACTION (2.7973 Å) | | Cite: | Crystal structure reveals specific recognition of a G-quadruplex RNA by a beta-turn in the RGG motif of FMRP.
Proc.Natl.Acad.Sci.USA, 112, 2015
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6D13 | | CRYSTAL STRUCTURE OF E.COLI RPPH-DAPF COMPLEX | | Descriptor: | Diaminopimelate epimerase, RNA pyrophosphohydrolase, IODIDE ION, ... | | Authors: | Gao, A., Serganov, A. | | Deposit date: | 2018-04-11 | | Release date: | 2018-05-23 | | Last modified: | 2018-08-08 | | Method: | X-RAY DIFFRACTION (3.06 Å) | | Cite: | Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
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