Author results

1MBE
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBF
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBG
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBH
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
Descriptor:C-MYB
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-09-15
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBJ
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBK
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MSE
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SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
Descriptor:DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), C-Myb DNA-Binding Domain
Authors:Ogata, K., Morikawa, S., Nakamura, H., Sekikawa, A., Inoue, T., Kanai, H., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-01-24
Release date:1995-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.
Cell(Cambridge,Mass.), 79, 1994
1MSF
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SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
Descriptor:DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), C-Myb DNA-Binding Domain
Authors:Ogata, K., Morikawa, S., Nakamura, H., Sekikawa, A., Inoue, T., Kanai, H., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-01-24
Release date:1995-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.
Cell(Cambridge,Mass.), 79, 1994
5X9D
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CRYSTAL STRUCTURE OF HOMOSERINE DEHYDROGENASE IN COMPLEX WITH L-CYSTEINE AND NAD
Descriptor:Homoserine dehydrogenase, (2R)-3-[[(4S)-3-aminocarbonyl-1-[(2R,3R,4S,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-4H-pyridin-4-yl]sulfanyl]-2-azanyl-propanoic acid, L(+)-TARTARIC ACID
Authors:Goto, M., Ogata, K., Kaneko, R., Yoshimune, K.
Deposit date:2017-03-06
Release date:2018-05-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Inhibition of homoserine dehydrogenase by formation of a cysteine-NAD covalent complex
Sci Rep, 8, 2018
1GTW
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CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER
Descriptor:CAAT/ENHANCER BINDING PROTEIN BETA, 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3'
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2002-01-22
Release date:2004-02-06
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
1GU4
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CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A HIGH AFFINITY DNA FRAGMENT
Descriptor:CAAT/ENHANCER BINDING PROTEIN BETA, 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3', 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3'
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2002-01-23
Release date:2003-06-26
Last modified:2017-03-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
1GU5
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CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE MIM-1 PROMOTER
Descriptor:CAAT/ENHANCER BINDING PROTEIN BETA, 5'-D(*TP*TP*GP*TP*GP*TP*TP*GP*GP*CP* CP*AP*AP*TP*CP*A)-3', 5'-D(*AP*TP*GP*AP*TP*TP*GP*GP*CP*CP* AP*AP*CP*AP*CP*A)-3'
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2002-01-24
Release date:2003-06-26
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
1H89
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CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
Descriptor:CAAT/ENHANCER BINDING PROTEIN BETA, MYB PROTO-ONCOGENE PROTEIN, DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ...
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2001-01-30
Release date:2002-01-28
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter
Cell(Cambridge,Mass.), 108, 2002
1H8A
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CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
Descriptor:CAAT/ENHANCER BINDING PROTEIN BETA, MYB TRANSFORMING PROTEIN, DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ...
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2001-01-31
Release date:2002-01-28
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter
Cell(Cambridge,Mass.), 108, 2002
1H88
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CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
Descriptor:CCAAT/ENHANCER BINDING PROTEIN BETA, MYB PROTO-ONCOGENE PROTEIN, DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ...
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2001-01-29
Release date:2002-01-28
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter
Cell(Cambridge,Mass.), 108, 2002
1GV5
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CRYSTAL STRUCTURE OF C-MYB R2
Descriptor:MYB PROTO-ONCOGENE PROTEIN, SODIUM ION
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2002-02-06
Release date:2003-07-03
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
1GVD
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CRYSTAL STRUCTURE OF C-MYB R2 V103L MUTANT
Descriptor:MYB PROTO-ONCOGENE PROTEIN, AMMONIUM ION, SULFATE ION
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2002-02-08
Release date:2003-07-03
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
1HJB
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CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
Descriptor:CCAAT/ENHANCER BINDING PROTEIN BETA, RUNT-RELATED TRANSCRIPTION FACTOR 1, DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3'), ...
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2001-01-11
Release date:2001-03-09
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
Cell(Cambridge,Mass.), 104, 2001
1HJC
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CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
Descriptor:RUNT-RELATED TRANSCRIPTION FACTOR 1, DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)-3'), DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)-3')
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2001-01-11
Release date:2001-03-09
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
Cell(Cambridge,Mass.), 104, 2001
1IO4
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CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
Descriptor:CSF-1R PROMOTER, CAAT/ENHANCER BINDING PROTEIN BETA, RUNT-RELATED TRANSCRIPTION FACTOR 1, ...
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2001-01-10
Release date:2001-03-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta.
Cell(Cambridge,Mass.), 104, 2001
1GUU
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CRYSTAL STRUCTURE OF C-MYB R1
Descriptor:MYB PROTO-ONCOGENE PROTEIN, SODIUM ION
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2002-01-30
Release date:2003-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
1GV2
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CRYSTAL STRUCTURE OF C-MYB R2R3
Descriptor:MYB PROTO-ONCOGENE PROTEIN, SODIUM ION
Authors:Tahirov, T.H., Ogata, K.
Deposit date:2002-02-05
Release date:2003-07-03
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
To be Published
2E42
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CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER V285A MUTANT BOUND TO A HIGH AFFINITY DNA FRAGMENT
Descriptor:DNA (5'-D(P*DTP*DAP*DGP*DGP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DT)-3'), DNA (5'-D(P*DAP*DAP*DTP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DCP*DCP*DT)-3'), CCAAT/enhancer-binding protein beta
Authors:Tahirov, T.H., Inoue-Bungo, T., Sato, K., Shiina, M., Hamada, K., Ogata, K.
Deposit date:2006-12-01
Release date:2007-12-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
2E43
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CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER K269A MUTANT BOUND TO A HIGH AFFINITY DNA FRAGMENT
Descriptor:DNA (5'-D(P*DTP*DAP*DGP*DGP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DT)-3'), DNA (5'-D(P*DAP*DAP*DTP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DCP*DCP*DT)-3'), CCAAT/enhancer-binding protein beta
Authors:Tahirov, T.H., Inoue-Bungo, T., Sato, K., Shiina, M., Hamada, K., Ogata, K.
Deposit date:2006-12-01
Release date:2007-12-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
3WTS
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CRYSTAL STRUCTURE OF THE COMPLEX COMPRISED OF ETS1, RUNX1, CBFBETA, AND THE TCRALPHA GENE ENHANCER DNA
Descriptor:Runt-related transcription factor 1, Core-binding factor subunit beta, Protein C-ets-1, ...
Authors:Shiina, M., Hamada, K., Ogata, K.
Deposit date:2014-04-21
Release date:2014-08-13
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A novel allosteric mechanism on protein-DNA interactions underlying the phosphorylation-dependent regulation of Ets1 target gene expressions
J.Mol.Biol., 2014
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