Author results

1XMO
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CRYSTAL STRUCTURE OF MNM5U34T6A37-TRNALYSUUU COMPLEXED WITH AAG-MRNA IN THE DECODING CENTER
Descriptor:16S ribosomal RNA, A-Site Messenger RNA, Anticodon Transfer RNA, ...
Authors:Murphy, F.V., Ramakrishnan, V., Malkiewicz, A., Agris, P.F.
Deposit date:2004-10-04
Release date:2004-12-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:The role of modifications in codon discrimination by tRNA(Lys)(UUU).
Nat.Struct.Mol.Biol., 11, 2004
1XMQ
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CRYSTAL STRUCTURE OF T6A37-ASLLYSUUU AAA-MRNA BOUND TO THE DECODING CENTER
Descriptor:16s ribosomal RNA, A-Site Messenger RNA, Anticodon RNA, ...
Authors:Murphy, F.V., Ramakrishnan, V., Malkiewicz, A., Agris, P.F.
Deposit date:2004-10-04
Release date:2004-12-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The role of modifications in codon discrimination by tRNA(Lys)(UUU).
Nat.Struct.Mol.Biol., 11, 2004
1XNQ
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STRUCTURE OF AN INOSINE-ADENINE WOBBLE BASE PAIR COMPLEX IN THE CONTEXT OF THE DECODING CENTER
Descriptor:16S ribosomal RNA, Anticodon tRNA, mRNA, ...
Authors:Murphy, F.V., Ramakrishnan, V.
Deposit date:2004-10-05
Release date:2004-12-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structure of a purine-purine wobble base pair in the decoding center of the ribosome.
Nat.Struct.Mol.Biol., 11, 2004
1XNR
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CRYSTAL STRUCTURE OF AN INOSINE-CYTOSINE WOBBLE BASE PAIR IN THE CONTEXT OF THE DECODING CENTER
Descriptor:16S Ribosomal RNA, Anticodon tRNA, mRNA, ...
Authors:Murphy, F.V., Ramakrishnan, V.
Deposit date:2004-10-05
Release date:2004-12-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of a purine-purine wobble base pair in the decoding center of the ribosome.
Nat.Struct.Mol.Biol., 11, 2004
3T1H
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN ANTI-CODON STEM LOOP (HASL) OF TRANSFER RNA LYSINE 3 (TRNALYS3) BOUND TO AN MRNA WITH AN AAA-CODON IN THE A-SITE AND PAROMOMYCIN
Descriptor:16s rRNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Murphy, F.V., Vendeix, F.A.P., Cantara, W., Leszczynska, G., Gustilo, E.M., Sproat, B., Malkiewicz, A.A.P., Agris, P.F.
Deposit date:2011-07-21
Release date:2012-01-25
Last modified:2012-03-07
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism.
J.Mol.Biol., 416, 2012
3T1Y
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN ANTI-CODON STEM LOOP (HASL) OF TRANSFER RNA LYSINE 3 (TRNALYS3) BOUND TO AN MRNA WITH AN AAG-CODON IN THE A-SITE AND PAROMOMYCIN
Descriptor:16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Murphy, F.V., Vendeix, F.A.P., Cantara, W., Leszczynska, G., Gustilo, E.M., Sproat, B., Malkiewicz, A.A.P., Agris, P.F.
Deposit date:2011-07-22
Release date:2012-01-25
Last modified:2012-09-12
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism.
J.Mol.Biol., 416, 2012
4JI3
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CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:16S rRNA, RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, ...
Authors:Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2014-10-15
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
2UUB
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUU-CODON IN THE A-SITE AND PAROMOMYCIN.
Descriptor:16S Ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Murphy, F.V., Dziergowska, A., Malkiewicz, A., Vendeix, F.A.P., Agris, P.F., Ramakrishnan, V.
Deposit date:2007-03-01
Release date:2007-05-15
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanism for Expanding the Decoding Capacity of Transfer Rnas by Modification of Uridines
Nat.Struct.Mol.Biol., 14, 2007
2UUC
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUA-CODON IN THE A-SITE AND PAROMOMYCIN.
Descriptor:16S Ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Murphy, F.V., Dziergowska, A., Malkiewicz, A., Vendeix, F.A.P., Agris, P.F., Ramakrishnan, V.
Deposit date:2007-03-01
Release date:2007-05-22
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
Nat. Struct. Mol. Biol., 14, 2007
4V51
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STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN
Descriptor:16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Selmer, M., Dunham, C.M., Murphy, F.V., Weixlbaumer, A., Petry, S., Weir, J.R., Kelley, A.C., Ramakrishnan, V.
Deposit date:2006-07-31
Release date:2014-07-09
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the 70S ribosome complexed with mRNA and tRNA.
Science, 313, 2006
5DW7
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CRYSTAL STRUCTURE OF THE UNLIGANDED GEOSMIN SYNTHASE N-TERMINAL DOMAIN FROM STREPTOMYCES COELICOLOR
Descriptor:Germacradienol/geosmin synthase
Authors:Lombardi, P.M., Harris, G.G., Pemberton, T.A., Matsui, T., Weiss, T.M., Cole, K.E., Koksal, M., Murphy, F.V., Vedula, L.S., Chou, W.K., Cane, D.E., Christianson, D.W.
Deposit date:2015-09-22
Release date:2015-11-25
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (3.202 Å)
Cite:Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with alpha alpha Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence.
Biochemistry, 54, 2015
5DZ2
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GEOSMIN SYNTHASE FROM STREPTOMYCES COELICOLOR N-TERMINAL DOMAIN COMPLEXED WITH THREE MG2+ IONS AND ALENDRONIC ACID
Descriptor:Germacradienol/geosmin synthase, MAGNESIUM ION, ALENDRONATE
Authors:Harris, G.G., Lombardi, P.M., Pemberton, T.A., Matsui, T., Weiss, T.M., Cole, K.E., Koksal, M., Murphy, F.V., Vedula, L.S., Chou, W.K.W., Cane, D.E., Christianson, D.W.
Deposit date:2015-09-25
Release date:2015-12-09
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.111 Å)
Cite:Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with alpha alpha Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence.
Biochemistry, 54, 2015
2UU9
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN.
Descriptor:16S RRNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Murphy, F.V., Dziergowska, A., Malkiewicz, A., Vendeix, F.A.P., Agris, P.F., Ramakrishnan, V.
Deposit date:2007-03-01
Release date:2007-05-15
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
Nat. Struct. Mol. Biol., 14, 2007
2UUA
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUC-CODON IN THE A-SITE AND PAROMOMYCIN.
Descriptor:16S RRNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Murphy, F.V., Dziergowska, A., Malkiewicz, A., Vendeix, F.A.P., Agris, P.F., Ramakrishnan, V.
Deposit date:2007-03-01
Release date:2007-05-15
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
Nat. Struct. Mol. Biol., 14, 2007
4GKJ
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN MITOCHONDRIAL ANTICODON STEM LOOP (ASL) OF TRANSFER RNA METHIONINE (TRNAMET) BOUND TO AN MRNA WITH AN AUG-CODON IN THE A-SITE AND PAROMOMYCIN.
Descriptor:16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Cantara, W.A., Murphy IV, F.V., Spears, J.L., Demirci, H., Agris, P.F.
Deposit date:2012-08-11
Release date:2013-06-05
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (3.298 Å)
Cite:Expanded use of sense codons is regulated by modified cytidines in tRNA.
Proc.Natl.Acad.Sci.USA, 110, 2013
4GKK
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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN MITOCHONDRIAL ANTICODON STEM LOOP (ASL) OF TRANSFER RNA METHIONINE (TRNAMET) BOUND TO AN MRNA WITH AN AUA-CODON IN THE A-SITE AND PAROMOMYCIN
Descriptor:16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Cantara, W.A., Murphy IV, F.V., Spears, J.L., Demirci, H., Agris, P.F.
Deposit date:2012-08-11
Release date:2013-06-05
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Expanded use of sense codons is regulated by modified cytidines in tRNA.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JI0
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CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:16S rRNA, ribosomal protein S2, ribosomal protein S3, ...
Authors:Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2013-12-04
Method:X-RAY DIFFRACTION (3.492 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4JI1
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CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:16S rRNA, RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, ...
Authors:Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2013-12-04
Method:X-RAY DIFFRACTION (3.144 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4JI2
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CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:16S rRNA, RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, ...
Authors:Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2013-12-04
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4JI4
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CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:16S rRNA, RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, ...
Authors:Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2013-12-04
Method:X-RAY DIFFRACTION (3.692 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4JI5
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CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:16S rRNA, RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, ...
Authors:Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2013-12-04
Method:X-RAY DIFFRACTION (3.85 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4JI6
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CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:16S rRNA, RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, ...
Authors:Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2013-12-04
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4JI7
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CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:16S rRNA, RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, ...
Authors:Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2013-12-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4JI8
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CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:16S rRNA, RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, ...
Authors:Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2013-12-04
Method:X-RAY DIFFRACTION (3.742 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4V5G
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THE CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND TO EF-TU AND TRNA
Descriptor:16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
Deposit date:2009-09-01
Release date:2014-07-09
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.
Science, 326, 2009
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