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4ERX
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BU of 4erx by Molmil
Crystal structure of the complex of peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with diethylene glycol at 2.5 Angstrom resolution
Descriptor: DI(HYDROXYETHYL)ETHER, Peptidyl-tRNA hydrolase
Authors:Kumar, A, Singh, A, Singh, N, Sinha, M, Sharma, S, Arora, A, Singh, T.P.
Deposit date:2012-04-21
Release date:2012-05-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the complex of peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with diethylene glycol at 2.5 Angstrom resolution
To be Published
4R60
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BU of 4r60 by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ...
Authors:Kumar, A, Ghosh, B, Are, V.N, Jamdar, S.N, Makde, R.D, Sharma, S.M.
Deposit date:2014-08-22
Release date:2014-09-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
to be published
8OH5
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BU of 8oh5 by Molmil
Cryo-EM structure of the electron bifurcating transhydrogenase StnABC complex from Sporomusa Ovata (state 2)
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Kumar, A, Kremp, F, Mueller, V, Schuller, J.M.
Deposit date:2023-03-20
Release date:2023-09-13
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Molecular architecture and electron transfer pathway of the Stn family transhydrogenase.
Nat Commun, 14, 2023
8OH9
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BU of 8oh9 by Molmil
Cryo-EM structure of the electron bifurcating transhydrogenase StnABC complex from Sporomusa Ovata (state 1)
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Formate dehydrogenase-O, ...
Authors:Kumar, A, Kremp, F, Mueller, V, Schuller, J.M.
Deposit date:2023-03-20
Release date:2023-09-13
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Molecular architecture and electron transfer pathway of the Stn family transhydrogenase.
Nat Commun, 14, 2023
5CDL
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BU of 5cdl by Molmil
Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase
Authors:Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
Deposit date:2015-07-04
Release date:2016-08-10
Last modified:2018-07-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
To Be Published
5CDV
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BU of 5cdv by Molmil
Proline dipeptidase from Deinococcus radiodurans R1
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ...
Authors:Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
Deposit date:2015-07-05
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Proline dipeptidase from Deinococcus radiodurans R1 at 1.45 Angstrom resolution
To Be Published
5CIK
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BU of 5cik by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
Descriptor: CITRIC ACID, GLYCEROL, Proline dipeptidase
Authors:Kumar, A, Are, V, Ghosh, B, Agrawal, U, Jamdar, S, Makde, R.D.
Deposit date:2015-07-13
Release date:2016-07-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
To Be Published
3SZX
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BU of 3szx by Molmil
Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations
Descriptor: RNA (5'-R(P*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3')
Authors:Kumar, A, Park, H, Pengfei, F, Parkesh, R, Guo, M, Nettles, K.W, Disney, M.D.
Deposit date:2011-07-19
Release date:2012-04-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations
Biochemistry, 50, 2011
3SYW
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BU of 3syw by Molmil
Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations
Descriptor: PHOSPHATE ION, RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3')
Authors:Kumar, A, Park, H, Pengfei, F, Parkesh, R, Guo, M, Nettles, K.W, Disney, M.D.
Deposit date:2011-07-18
Release date:2012-04-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations
Biochemistry, 50, 2011
4LQ6
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BU of 4lq6 by Molmil
Crystal structure of Rv3717 reveals a novel amidase from M. tuberculosis
Descriptor: CHLORIDE ION, N-acetymuramyl-L-alanine amidase-related protein, PLATINUM (II) ION, ...
Authors:Kumar, A, Kumar, S, Kumar, D, Mishra, A, Dewangan, R.P, Shrivastava, P, Ramachandran, S, Taneja, B.
Deposit date:2013-07-17
Release date:2013-12-04
Last modified:2014-01-15
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis.
Acta Crystallogr.,Sect.D, 69, 2013
3KJZ
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BU of 3kjz by Molmil
Crystal structure of native peptidyl-tRNA hydrolase from Mycobacterium smegmatis
Descriptor: Peptidyl-tRNA hydrolase
Authors:Kumar, A, Singh, N, Yadav, R, Prem Kumar, R, Sharma, S, Arora, A, Singh, T.P.
Deposit date:2009-11-04
Release date:2010-08-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of peptidyl-tRNA hydrolase from mycobacterium smegmatis reveals novel features related to enzyme dynamics.
Int J Biochem Mol Biol, 3, 2012
6JQV
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BU of 6jqv by Molmil
Crystal structure of Arabidopsis thaliana NRP2
Descriptor: NAP1-related protein 2
Authors:Kumar, A, Vasudevan, D.
Deposit date:2019-04-01
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structural Characterization ofArabidopsis thalianaNAP1-Related Protein 2 (AtNRP2) and Comparison with its Homolog AtNRP1.
Molecules, 24, 2019
8C4A
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BU of 8c4a by Molmil
Structural and interactional insights into the glideosome-associated connector from Toxoplasma gondii
Descriptor: Putative anonymous antigen-1
Authors:Kumar, A, Morgan, R.M.L, Matthews, S.J.
Deposit date:2023-01-03
Release date:2023-07-19
Method:X-RAY DIFFRACTION (2.675 Å)
Cite:Structural and regulatory insights into the glideosome-associated connector from Toxoplasma gondii.
Elife, 12, 2023
5N74
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BU of 5n74 by Molmil
Microtubule end binding protein complex
Descriptor: Karyogamy protein KAR9, Microtubule-associated protein RP/EB family member 1
Authors:Kumar, A, Steinmetz, M.
Deposit date:2017-02-18
Release date:2017-06-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Short Linear Sequence Motif LxxPTPh Targets Diverse Proteins to Growing Microtubule Ends.
Structure, 25, 2017
6Y90
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BU of 6y90 by Molmil
Structure of full-length CD20 in complex with Rituximab Fab
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, B-lymphocyte antigen CD20, CHOLESTEROL HEMISUCCINATE, ...
Authors:Kumar, A, Reyes, N.
Deposit date:2020-03-06
Release date:2020-08-26
Method:ELECTRON MICROSCOPY (3.69 Å)
Cite:Binding mechanisms of therapeutic antibodies to human CD20.
Science, 369, 2020
6Y97
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BU of 6y97 by Molmil
Structure of full-length CD20 in complex with Obinutuzumab Fab
Descriptor: B-lymphocyte antigen CD20, Obinutuzumab Fab heavy chain, Obinutuzumab Fab light chain
Authors:Kumar, A, Reyes, N.
Deposit date:2020-03-06
Release date:2020-08-26
Method:ELECTRON MICROSCOPY (4.33 Å)
Cite:Binding mechanisms of therapeutic antibodies to human CD20.
Science, 369, 2020
6Y92
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BU of 6y92 by Molmil
Structure of full-length CD20 in complex with Ofatumumab Fab
Descriptor: B-lymphocyte antigen CD20, CHOLESTEROL HEMISUCCINATE, Ofatumumab Fab heavy chain, ...
Authors:Kumar, A, Reyes, N.
Deposit date:2020-03-06
Release date:2020-08-26
Method:ELECTRON MICROSCOPY (4.73 Å)
Cite:Binding mechanisms of therapeutic antibodies to human CD20.
Science, 369, 2020
7AG9
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BU of 7ag9 by Molmil
Structure of the Kar9 protein
Descriptor: Kar9
Authors:Kumar, A, prota, A.E, Steinmetz, M.O.
Deposit date:2020-09-22
Release date:2021-07-07
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the Kar9 protein
Structure, 2021
5N2W
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BU of 5n2w by Molmil
WT-Parkin and pUB complex
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin, Polyubiquitin-B, ...
Authors:Kumar, A, Chaugule, V.K, Johnson, C, Toth, R, Sundaramoorthy, R, Knebel, A, Walden, H.
Deposit date:2017-02-08
Release date:2017-04-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity.
Nat. Struct. Mol. Biol., 24, 2017
6Y9A
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BU of 6y9a by Molmil
Structure of full-length CD20 in complex with Obinutuzumab Fab
Descriptor: B-lymphocyte antigen CD20, Obinutuzumab Fab Light chain, Obinutuzumab Fab heavy chain
Authors:Kumar, A, Reyes, N.
Deposit date:2020-03-06
Release date:2020-08-26
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Binding mechanisms of therapeutic antibodies to human CD20.
Science, 369, 2020
5N38
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BU of 5n38 by Molmil
S65DParkin and pUB complex
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin, ...
Authors:Kumar, A, Chaugule, V.K, Johnson, C, Toth, R, Sundaramoorthy, R, Knebel, A, Walden, H.
Deposit date:2017-02-08
Release date:2017-04-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity.
Nat. Struct. Mol. Biol., 24, 2017
4DJJ
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BU of 4djj by Molmil
Crystal structure of the complex of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with Pimelic acid at 2.9 Angstrom resolution
Descriptor: PIMELIC ACID, Peptidyl-tRNA hydrolase
Authors:Kumar, A, Singh, A, Singh, N, Sinha, M, Sharma, S, Arora, A, Singh, T.P.
Deposit date:2012-02-02
Release date:2012-03-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Crystal structure of the complex of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with Pimelic acid at 2.9 Angstrom resolution
To be Published
4DHW
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BU of 4dhw by Molmil
Crystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with Adipic acid at 2.4 Angstrom resolution
Descriptor: Peptidyl-tRNA hydrolase, hexanedioic acid
Authors:Kumar, A, Singh, A, Singh, N, Sinha, M, Sharma, S, Arora, A, Singh, T.P.
Deposit date:2012-01-30
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Crystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with Adipic acid at 2.4 Angstrom resolution
To be Published
1JYM
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BU of 1jym by Molmil
Crystals of Peptide Deformylase from Plasmodium falciparum with Ten Subunits per Asymmetric Unit Reveal Critical Characteristics of the Active Site for Drug Design
Descriptor: COBALT (II) ION, Peptide Deformylase
Authors:Kumar, A, Nguyen, K.T, Srivathsan, S, Ornstein, B, Turley, S, Hirsh, I, Pei, D, Hol, W.G.J.
Deposit date:2001-09-12
Release date:2002-03-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystals of peptide deformylase from Plasmodium falciparum reveal critical characteristics of the active site for drug design.
Structure, 10, 2002
7CXC
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BU of 7cxc by Molmil
Structure of mouse Galectin-3 CRD point mutant (V160A) in complex with TD-139 belonging to P121 space group.
Descriptor: 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside, Galectin-3
Authors:Kumar, A.
Deposit date:2020-09-01
Release date:2021-09-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular mechanism of interspecies differences in the binding affinity of TD139 to Galectin-3.
Glycobiology, 31, 2021

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