Author results

5L74
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PLEXIN A2 EXTRACELLULAR SEGMENT DOMAINS 4-5 (PSI2-IPT2), RESOLUTION 1.36 ANGSTROM
Descriptor:Plexin-A2, N-ACETYL-D-GLUCOSAMINE, SODIUM ION, ...
Authors:Kong, Y., Janssen, B.J.C., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-06-01
Release date:2017-03-15
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
5L7N
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PLEXIN A1 EXTRACELLULAR FRAGMENT, DOMAINS 7-10 (IPT3-IPT6)
Descriptor:Plexin-A1, N-ACETYL-D-GLUCOSAMINE, 1,2-ETHANEDIOL, ...
Authors:Kong, Y., Janssen, B.J.C., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-06-03
Release date:2017-03-15
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
5L56
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PLEXIN A1 FULL EXTRACELLULAR REGION, DOMAINS 1 TO 10, TO 4 ANGSTROM
Descriptor:Plexin-A1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Janssen, B.J.C., Kong, Y., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-05-28
Release date:2016-07-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
5L59
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PLEXIN A1 FULL EXTRACELLULAR REGION, DOMAINS 1 TO 10, TO 6 ANGSTROM, SPACEGROUP P2(1)
Descriptor:Plexin-A1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Janssen, B.J.C., Kong, Y., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-05-28
Release date:2016-07-06
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (6 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
5L5C
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PLEXIN A1 FULL EXTRACELLULAR REGION, DOMAINS 1 TO 10, TO 6 ANGSTROM, SPACEGROUP P4(3)2(1)2
Descriptor:Plexin-A1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Janssen, B.J.C., Kong, Y., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-05-28
Release date:2016-07-06
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (6 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
5L5G
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PLEXIN A2 FULL EXTRACELLULAR REGION, DOMAINS 1 TO 8 MODELED, DATA TO 10 ANGSTROM
Descriptor:Plexin-A2
Authors:Janssen, B.J.C., Kong, Y., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-05-28
Release date:2016-07-06
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (10 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
5L5K
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PLEXIN A4 FULL EXTRACELLULAR REGION, DOMAINS 1 TO 10, DATA TO 7.5 ANGSTROM, SPACEGROUP P4(1)
Descriptor:Plexin-A4
Authors:Janssen, B.J.C., Kong, Y., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-05-28
Release date:2016-07-06
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (7.501 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
5L5L
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PLEXIN A4 FULL EXTRACELLULAR REGION, DOMAINS 1 TO 8 MODELED, DATA TO 8 ANGSTROM, SPACEGROUP P2(1)
Descriptor:Plexin-A4
Authors:Janssen, B.J.C., Kong, Y., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-05-28
Release date:2016-07-06
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (8.001 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
5L5M
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PLEXIN A4 FULL EXTRACELLULAR REGION, DOMAINS 1 TO 7 MODELED, DATA TO 8 ANGSTROM, SPACEGROUP P4(3)2(1)2
Descriptor:Plexin-A4
Authors:Janssen, B.J.C., Kong, Y., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-05-28
Release date:2016-07-06
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (8 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
5L5N
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PLEXIN A4 FULL EXTRACELLULAR REGION, DOMAINS 1 TO 7 MODELED, DATA TO 8.5 ANGSTROM, SPACEGROUP P4(3)22
Descriptor:Plexin-A4
Authors:Janssen, B.J.C., Kong, Y., Malinauskas, T., Vangoor, V.R., Coles, C.H., Kaufmann, R., Ni, T., Gilbert, R.J.C., Padilla-Parra, S., Pasterkamp, R.J., Jones, E.Y.
Deposit date:2016-05-28
Release date:2016-07-06
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (8.502 Å)
Cite:Structural Basis for Plexin Activation and Regulation.
Neuron, 91, 2016
1XZY
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SOLUTION STRUCTURE OF THE P30-TRANS FORM OF ALPHA HEMOGLOBIN STABILIZING PROTEIN (AHSP)
Descriptor:Alpha-hemoglobin stabilizing protein
Authors:Gell, D.A., Feng, L., Zhou, S., Kong, Y., Lee, C., Weiss, M.J., Shi, Y., Mackay, J.P.
Deposit date:2004-11-12
Release date:2004-12-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular mechanism of AHSP-mediated stabilization of alpha-hemoglobin
Cell(Cambridge,Mass.), 119, 2004
5KTQ
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LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO DCTP
Descriptor:PROTEIN (DNA POLYMERASE I), 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
Authors:Li, Y., Kong, Y., Korolev, S., Waksman, G.
Deposit date:1998-09-22
Release date:1998-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the Klenow fragment of Thermus aquaticus DNA polymerase I complexed with deoxyribonucleoside triphosphates.
Protein Sci., 7, 1998
3D04
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CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACYL CARRIER PROTEIN DEHYDRATASE (FABZ) FROM HELICOBACTER PYLORI IN COMPLEX WITH SAKURANETIN
Descriptor:(3R)-hydroxymyristoyl-acyl carrier protein dehydratase, CHLORIDE ION, BENZAMIDINE, ...
Authors:Zhang, L., Kong, Y., Wu, D., Shen, X., Jiang, H.
Deposit date:2008-05-01
Release date:2008-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three flavonoids targeting the beta-hydroxyacyl-acyl carrier protein dehydratase from Helicobacter pylori: crystal structure characterization with enzymatic inhibition assay
Protein Sci., 17, 2008
4D0T
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GALNAC-T2 CRYSTAL SOAKED WITH UDP-GALNAC, EA2 PEPTIDE AND MANGANESE
Descriptor:POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2, PEPTIDE, MANGANESE (II) ION, ...
Authors:Lira-Navarrete, E., Iglesias-Fernandez, J., Zandberg, W.F., Companon, I., Kong, Y., Corzana, F., Pinto, B.M., Clausen, H., Peregrina, J.M., Vocadlo, D., Rovira, C., Hurtado-Guerrero, R.
Deposit date:2014-04-30
Release date:2014-05-28
Last modified:2014-08-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Substrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N-Acetylgalactosaminyltransferase 2.
Angew.Chem.Int.Ed.Engl., 53, 2014
4D0Z
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GALNAC-T2 CRYSTAL SOAKED WITH UDP-5SGALNAC, MEA2 AND MANGANESE (HIGHER RESOLUTION DATASET)
Descriptor:POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2, PEPTIDE, MANGANESE (II) ION, ...
Authors:Lira-Navarrete, E., Iglesias-Fernandez, J., Zandberg, W.F., Companon, I., Kong, Y., Corzana, F., Pinto, B.M., Clausen, H., Peregrina, J.M., Vocadlo, D., Rovira, C., Hurtado-Guerrero, R.
Deposit date:2014-04-30
Release date:2014-05-28
Last modified:2014-08-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Substrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N- Acetylgalactosaminyltransferase 2.
Angew.Chem.Int.Ed.Engl., 53, 2014
4D11
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GALNAC-T2 CRYSTAL SOAKED WITH UDP-5SGALNAC, MEA2 PEPTIDE AND MANGANESE (LOWER RESOLUTION DATASET)
Descriptor:POLYPEPTIDE GALNAC-TRANSFERASE T2, PEPTIDE, MANGANESE (II) ION, ...
Authors:Lira-Navarrete, E., Iglesias-Fernandez, J., Zandberg, W.F., Companon, I., Kong, Y., Corzana, F., Pinto, B.M., Clausen, H., Peregrina, J.M., Vocadlo, D., Rovira, C., Hurtado-Guerrero, R.
Deposit date:2014-05-01
Release date:2014-05-28
Last modified:2014-08-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Substrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N- Acetylgalactosaminyltransferase 2.
Angew.Chem.Int.Ed.Engl., 53, 2014
5AJN
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CRYSTAL STRUCTURE OF THE INACTIVE FORM OF GALNAC-T2 IN COMPLEX WITH THE GLYCOPEPTIDE MUC5AC-CYS13
Descriptor:POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2, MUCIN, SULFATE ION, ...
Authors:Lira-Navarrete, E., delasRivas, M., Companon, I., Pallares, M.C., Kong, Y., Iglesias-Fernandez, J., Bernardes, G.J.L., Peregrina, J.M., Rovira, C., Bernado, P., Bruscolini, P., Clausen, H., Lostao, A., Corzana, F., Hurtado-Guerrero, R.
Deposit date:2015-02-26
Release date:2015-03-11
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Dynamic Interplay between Catalytic and Lectin Domains of Galnac-Transferases Modulates Protein O-Glycosylation.
Nat.Commun., 6, 2015
5AJO
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CRYSTAL STRUCTURE OF THE INACTIVE FORM OF GALNAC-T2 IN COMPLEX WITH THE GLYCOPEPTIDE MUC5AC-3,13
Descriptor:POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2, MUCIN, N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE, ...
Authors:Lira-Navarrete, E., delasRivas, M., Companon, I., Pallares, M.C., Kong, Y., Iglesias-Fernandez, J., Bernardes, G.J.L., Peregrina, J.M., Rovira, C., Bernado, P., Bruscolini, P., Clausen, H., Lostao, A., Corzana, F., Hurtado-Guerrero, R.
Deposit date:2015-02-26
Release date:2015-03-11
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Dynamic Interplay between Catalytic and Lectin Domains of Galnac-Transferases Modulates Protein O-Glycosylation.
Nat.Commun., 6, 2015
5AJP
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CRYSTAL STRUCTURE OF THE ACTIVE FORM OF GALNAC-T2 IN COMPLEX WITH UDP AND THE GLYCOPEPTIDE MUC5AC-13
Descriptor:POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2, MUCIN, URIDINE-5'-DIPHOSPHATE, ...
Authors:Lira-Navarrete, E., delasRivas, M., Companon, I., Pallares, M.C., Kong, Y., Iglesias-Fernandez, J., Bernardes, G.J.L., Peregrina, J.M., Rovira, C., Bernado, P., Bruscolini, P., Clausen, H., Lostao, A., Corzana, F., Hurtado-Guerrero, R.
Deposit date:2015-02-26
Release date:2015-03-11
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Dynamic Interplay between Catalytic and Lectin Domains of Galnac-Transferases Modulates Protein O-Glycosylation.
Nat.Commun., 6, 2015
1Y01
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CRYSTAL STRUCTURE OF AHSP BOUND TO FE(II) ALPHA-HEMOGLOBIN
Descriptor:Alpha-hemoglobin stabilizing protein, Hemoglobin alpha chain, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Feng, L., Gell, D.A., Zhou, S., Gu, L., Gow, A.J., Weiss, M.J., Mackay, J.P., Shi, Y.
Deposit date:2004-11-14
Release date:2004-12-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular mechanism of AHSP-mediated stabilization of alpha-hemoglobin.
Cell(Cambridge,Mass.), 119, 2004
3HP3
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CRYSTAL STRUCTURE OF CXCL12
Descriptor:CXCL12 protein, GOLD ION
Authors:Murphy, J.W., Lolis, E., Xiong, Y., Yuan, H., Crichlow, G.
Deposit date:2009-06-03
Release date:2010-01-26
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Heterologous quaternary structure of CXCL12 and its relationship to the CC chemokine family
Proteins, 78, 2009
3GV3
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CXCL12 (SDF) IN TRIGONAL SPACE GROUP
Descriptor:CXCL12 protein
Authors:Murphy, J.W., Crichlow, G., Lolis, E.
Deposit date:2009-03-30
Release date:2010-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Heterologous quaternary structure of CXCL12 and its relationship to the CC chemokine family.
Proteins, 78, 2009
2PVP
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CRYSTAL STRUCTURE OF D-ALANINE-D-ALANINE LIGASE FROM HELICOBACTER PYLORI
Descriptor:D-alanine-D-alanine ligase
Authors:Wu, D., Zhang, L., Jiang, H., Shen, X.
Deposit date:2007-05-10
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Enzymatic characterization and crystal structure analysis of the D-alanine-D-alanine ligase from Helicobacter pylori.
Proteins, 72, 2008
3CF8
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CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACYL CARRIER PROTEIN DEHYDRATASE (FABZ) FROM HELICOBACTER PYLORI IN COMPLEX WITH QUERCETIN
Descriptor:(3R)-hydroxymyristoyl-acyl carrier protein dehydratase, CHLORIDE ION, BENZAMIDINE, ...
Authors:Zhang, L., Wu, D., Liu, W., Shen, X., Jiang, H.
Deposit date:2008-03-03
Release date:2008-12-09
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three flavonoids targeting the beta-hydroxyacyl-acyl carrier protein dehydratase from Helicobacter pylori: crystal structure characterization with enzymatic inhibition assay
Protein Sci., 17, 2008
3CF9
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CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACYL CARRIER PROTEIN DEHYDRATASE (FABZ) FROM HELICOBACTER PYLORI IN COMPLEX WITH APIGENIN
Descriptor:(3R)-hydroxymyristoyl-acyl carrier protein dehydratase, CHLORIDE ION, 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one, ...
Authors:Zhang, L., Wu, D., Liu, W., Shen, X., Jiang, H.
Deposit date:2008-03-03
Release date:2008-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Three flavonoids targeting the beta-hydroxyacyl-acyl carrier protein dehydratase from Helicobacter pylori: crystal structure characterization with enzymatic inhibition assay
Protein Sci., 17, 2008
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