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1IT8
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BU of 1it8 by Molmil
Crystal structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii complexed with archaeosine precursor, preQ0
Descriptor: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, MAGNESIUM ION, ZINC ION, ...
Authors:Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-01-11
Release date:2002-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IT7
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BU of 1it7 by Molmil
Crystal structure of archaeosine tRNA-guanine transglycosylase complexed with guanine
Descriptor: Archaeosine tRNA-guanine transglycosylase, GUANINE, MAGNESIUM ION, ...
Authors:Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-01-11
Release date:2002-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IQ8
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BU of 1iq8 by Molmil
Crystal Structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii
Descriptor: ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE, MAGNESIUM ION, ZINC ION
Authors:Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-07-09
Release date:2002-05-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1J2B
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BU of 1j2b by Molmil
Crystal Structure Of Archaeosine tRNA-Guanine Transglycosylase Complexed With lambda-form tRNA(Val)
Descriptor: Archaeosine tRNA-guanine transglycosylase, MAGNESIUM ION, ZINC ION, ...
Authors:Ishitani, R, Nureki, O, Nameki, N, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-29
Release date:2003-05-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme
Cell(Cambridge,Mass.), 113, 2003
5I20
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BU of 5i20 by Molmil
Crystal structure of protein
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, SULFATE ION, Uncharacterized protein
Authors:Ishitani, R, Nureki, O.
Deposit date:2016-02-08
Release date:2016-06-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for amino acid export by DMT superfamily transporter YddG.
Nature, 534, 2016
4XJ1
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BU of 4xj1 by Molmil
Crystal structure of Vibrio cholerae DncV apo form
Descriptor: 1,2-ETHANEDIOL, Cyclic AMP-GMP synthase
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ4
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BU of 4xj4 by Molmil
Crystal structure of Vibrio cholerae DncV 3'-deoxy ATP bound form
Descriptor: 1,2-ETHANEDIOL, 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, Cyclic AMP-GMP synthase, ...
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.596 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ5
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BU of 4xj5 by Molmil
Crystal structure of Vibrio cholerae DncV 3'-deoxy GTP bound form
Descriptor: 1,2-ETHANEDIOL, 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, Cyclic AMP-GMP synthase, ...
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.552 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
5XSZ
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BU of 5xsz by Molmil
Crystal structure of zebrafish lysophosphatidic acid receptor LPA6
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Lysophosphatidic acid receptor 6a,Endolysin,Lysophosphatidic acid receptor 6a
Authors:Taniguchi, R, Nishizawa, T, Ishitani, R, Nureki, O.
Deposit date:2017-06-16
Release date:2017-08-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into ligand recognition by the lysophosphatidic acid receptor LPA6
Nature, 548, 2017
5JYJ
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BU of 5jyj by Molmil
Crystal structure of mouse JUNO
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sperm-egg fusion protein Juno
Authors:Kato, K, Nishimasu, H, Morita, J, Ishitani, R, Nureki, O.
Deposit date:2016-05-14
Release date:2017-05-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the egg IZUMO1 receptor JUNO
To Be Published
1VFG
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BU of 1vfg by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, RNA (75-MER), poly A polymerase
Authors:Tomita, K, Fukai, S, Ishitani, R, Ueda, T, Takeuchi, N, Vassylyev, D.G, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-04-13
Release date:2004-08-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for template-independent RNA polymerization.
Nature, 430, 2004
5XH7
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BU of 5xh7 by Molmil
Crystal structure of the Acidaminococcus sp. BV3L6 Cpf1 RR variant in complex with crRNA and target DNA (TCCA PAM)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CRISPR-associated endonuclease Cpf1, ...
Authors:Nishimasu, H, Yamano, T, Ishitani, R, Nureki, O.
Deposit date:2017-04-19
Release date:2017-06-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Altered PAM Recognition by Engineered CRISPR-Cpf1
Mol. Cell, 67, 2017
4XJ6
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BU of 4xj6 by Molmil
Crystal structure of Escherichia coli DncV 3'-deoxy GTP bound form
Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, VC0179-like protein
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ3
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BU of 4xj3 by Molmil
Crystal structure of Vibrio cholerae DncV GTP bound form
Descriptor: 1,2-ETHANEDIOL, Cyclic AMP-GMP synthase, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
5X2G
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BU of 5x2g by Molmil
Crystal structure of Campylobacter jejuni Cas9 in complex with sgRNA and target DNA (AGAAACC PAM)
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, Non-target DNA strand, ...
Authors:Yamada, M, Watanabe, Y, Hirano, H, Nakane, T, Ishitani, R, Nishimasu, H, Nureki, O.
Deposit date:2017-01-31
Release date:2017-03-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
Mol. Cell, 65, 2017
5X2H
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BU of 5x2h by Molmil
Crystal structure of Campylobacter jejuni Cas9 in complex with sgRNA and target DNA (AGAAACA PAM)
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, Non-target DNA strand, ...
Authors:Yamada, M, Watanabe, Y, Hirano, H, Nakane, T, Ishitani, R, Nishimasu, H, Nureki, O.
Deposit date:2017-01-31
Release date:2017-03-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
Mol. Cell, 65, 2017
6IJF
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BU of 6ijf by Molmil
Crystal structure of the type VI effector-immunity complex (Tae4-Tai4) from Agrobacterium tumefaciens
Descriptor: PENTAETHYLENE GLYCOL, SULFATE ION, Tae4, ...
Authors:Fukuhara, S, Nakane, T, Yamashita, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2018-10-09
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex.
Acta Crystallogr F Struct Biol Commun, 74, 2018
4WIB
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BU of 4wib by Molmil
Crystal structure of Magnesium transporter MgtE
Descriptor: CALCIUM ION, Magnesium transporter MgtE
Authors:Takeda, H, Hattori, M, Nishizawa, T, Yamashita, K, Shah, S.T.A, Caffrey, M, Maturana, A.D, Ishitani, R, Nureki, O.
Deposit date:2014-09-25
Release date:2014-12-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg(2+) channel MgtE
Nat Commun, 5, 2014
6IU4
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BU of 6iu4 by Molmil
Crystal structure of iron transporter VIT1 with cobalt ion
Descriptor: COBALT (II) ION, VIT1, ZINC ION
Authors:Kato, T, Nishizawa, T, Yamashita, K, Taniguchi, R, Kumazaki, K, Ishitani, R, Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
6IJE
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BU of 6ije by Molmil
Crystal structure of the type VI amidase immunity (Tai4) from Agrobacterium tumefaciens
Descriptor: 1,2-ETHANEDIOL, Tai4
Authors:Fukuhara, S, Nakane, T, Yamashita, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2018-10-09
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6IU3
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BU of 6iu3 by Molmil
Crystal structure of iron transporter VIT1 with zinc ions
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, VIT1, ZINC ION
Authors:Kato, T, Nishizawa, T, Yamashita, K, Taniguchi, R, Kumazaki, K, Ishitani, R, Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
4X5M
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BU of 4x5m by Molmil
Crystal structure of SemiSWEET in the inward-open conformation
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, OLEIC ACID, ...
Authors:Lee, Y, Nishizawa, T, Yamashita, K, Ishitani, R, Nureki, O.
Deposit date:2014-12-05
Release date:2015-01-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the facilitative diffusion mechanism by SemiSWEET transporter
Nat Commun, 6, 2015
4X5N
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BU of 4x5n by Molmil
Crystal structure of SemiSWEET in the inward-open and outward-open conformations
Descriptor: Uncharacterized protein
Authors:Lee, Y, Nishizawa, T, Yamashita, K, Ishitani, R, Nureki, O.
Deposit date:2014-12-05
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for the facilitative diffusion mechanism by SemiSWEET transporter
Nat Commun, 6, 2015
6IU9
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BU of 6iu9 by Molmil
Crystal structure of cytoplasmic metal binding domain with iron ions
Descriptor: FE (II) ION, VIT1, ZINC ION
Authors:Kato, T, Nishizawa, T, Yamashita, K, Kumazaki, K, Ishitani, R, Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
6IU5
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BU of 6iu5 by Molmil
Crystal structure of cytoplasmic metal binding domain with zinc ions
Descriptor: CHLORIDE ION, VIT1, ZINC ION
Authors:Kato, T, Nishizawa, T, Yamashita, K, Kumazaki, K, Ishitani, R, Nureki, O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019

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PDB entries from 2024-09-18

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