Author results

1K85
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SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE III DOMAIN FROM BACILLUS CIRCULANS WL-12 CHITINASE A1.
Descriptor:CHITINASE A1
Authors:Jee, J.G., Ikegami, T., Hashimoto, M., Kawabata, T., Ikeguchi, M., Watanabe, T., Shirakawa, M.
Deposit date:2001-10-23
Release date:2002-12-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Fibronectin Type III Domain from Bacillus circulans WL-12 Chitinase A1
J.Biol.Chem., 277, 2002
1V8Z
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X-RAY CRYSTAL STRUCTURE OF THE TRYPTOPHAN SYNTHASE B2 SUBUNIT FROM HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS
Descriptor:Tryptophan synthase beta chain 1, SODIUM ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Hioki, Y., Ogasahara, K., Lee, S.J., Ma, J., Ishida, M., Yamagata, Y., Matsuura, Y., Ota, M., Kuramitsu, S., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-15
Release date:2005-02-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The crystal structure of the tryptophan synthase beta subunit from the hyperthermophile Pyrococcus furiosus. Investigation of stabilization factors
Eur.J.Biochem., 271, 2004
2NOO
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CRYSTAL STRUCTURE OF MUTANT NIKA
Descriptor:Nickel-binding periplasmic protein, IODIDE ION, NICKEL (II) ION
Authors:Addy, C., Ohara, M., Kawai, F., Kidera, A., Ikeguchi, M., Fuchigami, S., Osawa, M., Shimada, I., Park, S.Y., Tame, J.R.H., Heddle, J.G.
Deposit date:2006-10-26
Release date:2007-01-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
2RPQ
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SOLUTION STRUCTURE OF A SUMO-INTERACTING MOTIF OF MBD1-CONTAINING CHROMATIN-ASSOCIATED FACTOR 1 BOUND TO SUMO-3
Descriptor:Small ubiquitin-related modifier 2, Activating transcription factor 7-interacting protein 1
Authors:Sekiyama, N., Ikegami, T., Yamane, T., Ikeguchi, M., Uchimura, Y., Baba, D., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
Deposit date:2008-07-07
Release date:2008-10-07
Last modified:2015-12-09
Method:SOLUTION NMR
Cite:Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
2RQ6
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SOLUTION STRUCTURE OF THE EPSILON SUBUNIT OF THE F1-ATPASE FROM THERMOSYNECHOCOCCUS ELONGATUS BP-1
Descriptor:ATP synthase epsilon chain
Authors:Yagi, H., Konno, H., Murakami-Fuse, T., Oroguchi, H., Akutsu, T., Ikeguchi, M., Hisabori, T.
Deposit date:2009-03-03
Release date:2010-01-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural and functional analysis of the intrinsic inhibitor subunit epsilon of F1-ATPase from photosynthetic organisms.
Biochem.J., 425, 2010
2RQ7
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SOLUTION STRUCTURE OF THE EPSILON SUBUNIT CHIMERA COMBINING THE N-TERMINAL BETA-SANDWICH DOMAIN FROM T. ELONGATUS BP-1 F1 AND THE C-TERMINAL ALPHA-HELICAL DOMAIN FROM SPINACH CHLOROPLAST F1
Descriptor:ATP synthase epsilon chain
Authors:Yagi, H., Konno, H., Murakami-Fuse, T., Oroguchi, H., Akutsu, T., Ikeguchi, M., Hisabori, T.
Deposit date:2009-03-03
Release date:2010-01-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural and functional analysis of the intrinsic inhibitor subunit epsilon of F1-ATPase from photosynthetic organisms.
Biochem.J., 425, 2010
2RVQ
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SOLUTION STRUCTURE OF THE ISOLATED HISTONE H2A-H2B HETERODIMER
Descriptor:Histone H2A type 1-B/E, Histone H2B type 1-J
Authors:Moriwaki, Y., Yamane, T., Ohtomo, H., Ikeguchi, M., Kurita, J., Sato, M., Nagadoi, A., Shimojo, H., Nishimura, Y.
Deposit date:2016-03-28
Release date:2016-05-25
Method:SOLUTION NMR
Cite:Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
2Z33
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SOLUTION STRUCTURE OF THE DNA COMPLEX OF PHOB DNA-BINDING/TRANSACTIVATION DOMAIN
Descriptor:5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB
Authors:Yamane, T., Okamura, H., Ikeguchi, M., Nishimura, Y., Kidera, A.
Deposit date:2007-05-31
Release date:2008-04-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
3A57
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CRYSTAL STRUCTURE OF THERMOSTABLE DIRECT HEMOLYSIN
Descriptor:Thermostable direct hemolysin 2
Authors:Hashimoto, H., Yanagihara, I., Nakahira, K., Hamada, D., Ikegami, T., Mayanagi, K., Kaieda, S., Fukui, T., Ohnishi, K., Kajiyama, S., Yamane, T., Ikeguchi, M., Honda, T., Shimizu, T., Sato, M.
Deposit date:2009-08-03
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin
J.Biol.Chem., 285, 2010
3KZA
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CRYSTAL STRUCTURE OF GYUBA, A PATCHED CHIMERA OF B-LACTGLOBULIN
Descriptor:Beta-lactoglobulin
Authors:Tsuge, H., Ohtomo, H., Utsunomiya, H., Konuma, T., Ikeguchi, M.
Deposit date:2009-12-08
Release date:2010-12-22
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and stability of Gyuba, a patched chimera of b-lactoglobulin
Protein Sci., 20, 2011
3VIQ
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CRYSTAL STRUCTURE OF SWI5-SFR1 COMPLEX FROM FISSION YEAST
Descriptor:Swi5-dependent recombination DNA repair protein 1, Mating-type switching protein swi5, GLYCEROL, ...
Authors:Kuwabara, N., Murayama, Y., Hashimoto, H., Kokabu, Y., Ikeguchi, M., Sato, M., Mayanagi, K., Tsutsui, Y., Iwasaki, H., Shimizu, T.
Deposit date:2011-10-06
Release date:2012-08-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex
Structure, 20, 2012
3VIR
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CRYSTAL STRCTURE OF SWI5 FROM FISSION YEAST
Descriptor:Mating-type switching protein swi5, B-OCTYLGLUCOSIDE
Authors:Kuwabara, N., Yamada, N., Hashimoto, H., Sato, M., Iwasaki, H., Shimizu, T.
Deposit date:2011-10-06
Release date:2012-08-22
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex
Structure, 20, 2012
5B41
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CRYSTAL STRUCTURE OF VDR-LBD COMPLEXED WITH 2-METHYLIDENE-19-NOR-1A,25-DIHYDROXYVITAMIN D3
Descriptor:Vitamin D3 receptor, Mediator of RNA polymerase II transcription subunit 1, (1R,3R)-5-(2-((1R,3aS,7aR,E)-1-((R)-6-hydroxy-6-methylheptan-2-yl)-7a-methyloctahydro-4H-inden-4-ylidene)ethylidene)-2-methylenecyclohexane-1,3-diol
Authors:Anami, Y., Itoh, T., Yamamoto, K.
Deposit date:2016-03-23
Release date:2016-12-07
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Apo- and Antagonist-Binding Structures of Vitamin D Receptor Ligand-Binding Domain Revealed by Hybrid Approach Combining Small-Angle X-ray Scattering and Molecular Dynamics
J.Med.Chem., 59, 2016
5GGF
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CRYSTAL STRUCTURE OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE FORM II
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N., Senda, T., Kato, R.
Deposit date:2016-06-15
Release date:2016-08-10
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGG
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CRYSTAL STRUCTURE OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE FORM I
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N., Senda, T., Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGI
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CRYSTAL STRUCTURE OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH MN, UDP AND MANNOSYL-PEPTIDE
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, mannosyl-peptide, URIDINE-5'-DIPHOSPHATE, ...
Authors:Kuwabara, N., Senda, T., Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGJ
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CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH MAN-ALPHA-PNP
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, 4'-NITROPHENYL-ALPHA-D-MANNOPYRANOSIDE
Authors:Kuwabara, N., Senda, T., Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (1.424 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGK
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CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH MAN-BETA-PNP
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, 4-Nitrophenyl-beta-D-mannopyranoside, GLYCEROL, ...
Authors:Kuwabara, N., Senda, T., Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGL
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CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH GLCNAC-ALPHA-PNP
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, N-[(2R,3R,4R,5S,6R)-6-(hydroxymethyl)-2-(4-nitrophenoxy)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide
Authors:Kuwabara, N., Senda, T., Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGN
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CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH GLCNAC-BETA-PNP
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, N-[(2S,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(4-nitrophenoxy)oxan-3-yl]ethanamide
Authors:Kuwabara, N., Senda, T., Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (1.211 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGO
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CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH GALNAC-BETA1,3-GLCNAC-BETA-PNP
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, N-[(2S,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(4-nitrophenoxy)oxan-3-yl]ethanamide, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Kuwabara, N., Senda, T., Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGP
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CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH GLCNAC-BETA1,2-MAN-PEPTIDE
Descriptor:Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, 10-mer Peptide from Dystroglycan, SODIUM ION, ...
Authors:Kuwabara, N., Senda, T., Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5WVO
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CRYSTAL STRUCTURE OF DNMT1 RFTS DOMAIN IN COMPLEX WITH K18/K23 MONO-UBIQUITYLATED HISTONE H3
Descriptor:Ubiquitin, DNA (cytosine-5)-methyltransferase 1, Histone H3.1, ...
Authors:Ishiyama, S., Nishiyama, A., Nakanishi, M., Arita, K.
Deposit date:2016-12-28
Release date:2017-11-15
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Structure of the Dnmt1 Reader Module Complexed with a Unique Two-Mono-Ubiquitin Mark on Histone H3 Reveals the Basis for DNA Methylation Maintenance
Mol. Cell, 68, 2017