Author results

2I68
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CRYO-EM BASED THEORETICAL MODEL STRUCTURE OF TRANSMEMBRANE DOMAIN OF THE MULTIDRUG-RESISTANCE ANTIPORTER FROM E. COLI EMRE
Descriptor:Protein emrE
Authors:Fleishman, S.J., Harrington, S.E., Enosh, A., Halperin, D., Tate, C.G., Ben-Tal, N.
Deposit date:2006-08-28
Release date:2006-10-03
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (7.5 Å)
Cite:Quasi-symmetry in the Cryo-EM Structure of EmrE Provides the Key to Modeling its Transmembrane Domain
J.Mol.Biol., 364, 2006
5MI0
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A THERMALLY STABILISED VERSION OF PLASMODIUM FALCIPARUM RH5
Descriptor:Reticulocyte binding-like protein 5,Reticulocyte binding protein 5, MONOCLONAL ANTIBODY 9AD4
Authors:Campeotto, I., Goldenzweig, A., Davey, J., Barfod, L., Marshall, J.M., Silk, S.E., Wright, K.E., Draper, S.J., Higgins, M.K., Fleishman, S.J.
Deposit date:2016-11-27
Release date:2016-12-28
Last modified:2017-02-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:One-step design of a stable variant of the malaria invasion protein RH5 for use as a vaccine immunogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2WPT
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THE CRYSTAL STRUCTURE OF IM2 IN COMPLEX WITH COLICIN E9 DNASE
Descriptor:COLICIN-E2 IMMUNITY PROTEIN, COLICIN-E9, GLYCEROL, ...
Authors:Meenan, N.A., Sharma, A., Fleishman, S.J., Macdonald, C.J., Boetzel, R., Moore, G.R., Baker, D., Kleanthous, C.
Deposit date:2009-08-10
Release date:2010-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:The Structural and Energetic Basis for High Selectivity in a High-Affinity Protein-Protein Interaction.
Proc.Natl.Acad.Sci.USA, 107, 2010
4D49
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CRYSTAL STRUCTURE OF COMPUTATIONALLY DESIGNED ARMADILLO REPEAT PROTEINS FOR MODULAR PEPTIDE RECOGNITION.
Descriptor:ARMADILLO REPEAT PROTEIN ARM00027, POLY ARG DECAPEPTIDE, ARGININE
Authors:Reichen, C., Forzani, C., Zhou, T., Parmeggiani, F., Fleishman, S.J., Mittl, P.R.E., Madhurantakam, C., Honegger, A., Ewald, C., Zerbe, O., Baker, D., Caflisch, A., Pluckthun, A.
Deposit date:2014-10-27
Release date:2016-01-13
Last modified:2016-11-09
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Computationally Designed Armadillo Repeat Proteins for Modular Peptide Recognition.
J.Mol.Biol., 428, 2016
4D4E
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CRYSTAL STRUCTURE OF COMPUTATIONALLY DESIGNED ARMADILLO REPEAT PROTEINS FOR MODULAR PEPTIDE RECOGNITION.
Descriptor:ARMADILLO REPEAT PROTEIN ARM00016, GLYCEROL
Authors:Reichen, C., Forzani, C., Zhou, T., Parmeggiani, F., Fleishman, S.J., Mittl, P.R.E., Madhurantakam, C., Honegger, A., Ewald, C., Zerbe, O., Baker, D., Caflisch, A., Pluckthun, A.
Deposit date:2014-10-28
Release date:2016-01-13
Last modified:2016-11-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Computationally Designed Armadillo Repeat Proteins for Modular Peptide Recognition.
J.Mol.Biol., 428, 2016
5HQ3
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STABLE, HIGH-EXPRESSION VARIANT OF HUMAN ACETYLCHOLINESTERASE
Descriptor:Acetylcholinesterase, O-ETHYLMETHYLPHOSPHONIC ACID ESTER GROUP, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Goldenzweig, A., Goldsmith, M., Hill, S.E., Gertman, O., Laurino, P., Ashani, Y., Dym, O., Albeck, S., Unger, T., Prilusky, J., Lieberman, R.L., Aharoni, A., Silman, I., Sussman, J.L., Tawfik, D.S., Fleishman, S.J.
Deposit date:2016-01-21
Release date:2016-07-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Automated Structure- and Sequence-Based Design of Proteins for High Bacterial Expression and Stability.
Mol.Cell, 63, 2016
5NB5
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PRINCIPLES FOR COMPUTATIONAL DESIGN OF ANTIBODIES
Descriptor:design of antibodies
Authors:Dym, O., Fleishman, S.J.
Deposit date:2017-03-01
Release date:2017-09-27
Last modified:2018-09-12
Method:X-RAY DIFFRACTION (3 Å)
Cite:Principles for computational design of binding antibodies.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NBI
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PRINCIPLES FOR COMPUTATIONAL DESIGN OF ANTIBODIES
Descriptor:Design of antibodies
Authors:Dym, O., Fleishman, S.J.
Deposit date:2017-03-02
Release date:2017-09-27
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Principles for computational design of binding antibodies.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6GBJ
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REPERTOIRES OF FUNCTIONALLY DIVERSE ENZYMES THROUGH COMPUTATIONAL DESIGN AT EPISTATIC ACTIVE-SITE POSITIONS
Descriptor:Parathion hydrolase, FORMIC ACID, ZINC ION, ...
Authors:Khersonsky, O., Lipsh, R., Avizemer, Z., Goldsmith, M., Ashani, Y., Leader, H., Dym, O., Rogotner, S., Trudeau, D., Tawfik, D.S., Fleishman, S.J.
Deposit date:2018-04-15
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Automated Design of Efficient and Functionally Diverse Enzyme Repertoires.
Mol. Cell, 72, 2018
6GBK
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REPERTOIRES OF FUNCTIONALLY DIVERSE ENZYMES THROUGH COMPUTATIONAL DESIGN AT EPISTATIC ACTIVE-SITE POSITIONS
Descriptor:Parathion hydrolase, FORMIC ACID, ZINC ION, ...
Authors:Khersonsky, O., Lipsh, R., Avizemer, Z., Goldsmith, M., Ashani, Y., Leader, H., Dym, O., Rogotner, S., Trudeau, D., Tawfik, D.S., Fleishman, S.J.
Deposit date:2018-04-15
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Automated Design of Efficient and Functionally Diverse Enzyme Repertoires.
Mol. Cell, 72, 2018
6GBL
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REPERTOIRES OF FUNCTIONALLY DIVERSE ENZYMES THROUGH COMPUTATIONAL DESIGN AT EPISTATIC ACTIVE-SITE POSITIONS
Descriptor:Parathion hydrolase, FORMIC ACID, ZINC ION, ...
Authors:Khersonsky, O., Lipsh, R., Avizemer, Z., Goldsmith, M., Ashani, Y., Leader, H., Dym, O., Rogotner, S., Trudeau, D., Tawfik, D.S., Fleishman, S.J.
Deposit date:2018-04-15
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Automated Design of Efficient and Functionally Diverse Enzyme Repertoires.
Mol. Cell, 72, 2018
6GC2
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ABLIFT: ANTIBODY STABILITY AND AFFINITY OPTIMIZATION BY COMPUTATIONAL DESIGN OF THE VARIABLE LIGHT-HEAVY CHAIN INTERFACE
Descriptor:Light Chain, Heavy chain
Authors:Warszawski, S., Katz, A., Khmelnitsky, L., Ben Nissan, G., Javitt, G., Dym, O., Unger, T., Knop, O., Diskin, R., Albeck, S., Fass, D., Sharon, M., Fleishman, S.J.
Deposit date:2018-04-17
Release date:2019-05-01
Last modified:2019-06-19
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces
To Be Published
3R2X
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CRYSTAL STRUCTURE OF THE DE NOVO DESIGNED BINDING PROTEIN HB36.3 IN COMPLEX THE THE 1918 INFLUENZA VIRUS HEMAGGLUTININ
Descriptor:Hemagglutinin, HB36.3, designed hemagglutinin binding protein, ...
Authors:Ekiert, D.C., Wilson, I.A.
Deposit date:2011-03-14
Release date:2011-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Computational design of proteins targeting the conserved stem region of influenza hemagglutinin.
Science, 332, 2011
6FHE
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HIGHLY ACTIVE ENZYMES BY AUTOMATED MODULAR BACKBONE ASSEMBLY AND SEQUENCE DESIGN
Descriptor:Synthetic construct
Authors:Lapidot, G., Khersonsky, O., Lipsh, R., Dym, O., Albeck, S., Rogotner, S., Fleishman, J.S.
Deposit date:2018-01-14
Release date:2018-07-25
Last modified:2018-08-01
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Highly active enzymes by automated combinatorial backbone assembly and sequence design.
Nat Commun, 9, 2018
6FHF
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HIGHLY ACTIVE ENZYMES BY AUTOMATED MODULAR BACKBONE ASSEMBLY AND SEQUENCE DESIGN
Descriptor:Design, SODIUM ION
Authors:Lapidot, G., Khersonsky, O., Lipsh, R., Dym, O., Albeck, S., Rogotner, S., Fleishman, J.S.
Deposit date:2018-01-14
Release date:2018-07-25
Last modified:2018-08-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Highly active enzymes by automated combinatorial backbone assembly and sequence design.
Nat Commun, 9, 2018
2P1Y
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1.B2.D9, A BISPECIFIC ALPHA/BETA TCR
Descriptor:bispecific alpha/beta TCR
Authors:McBeth, C., Pizarro, J.C., Strong, R.K.
Deposit date:2007-03-06
Release date:2008-02-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:A new twist in TCR diversity revealed by a forbidden alphabeta TCR.
J.Mol.Biol., 375, 2008
2P24
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I-AU/MBP125-135
Descriptor:H-2 class II histocompatibility antigen, A-U alpha chain, A-U beta chain
Authors:McBeth, C., Strong, R.K.
Deposit date:2007-03-06
Release date:2008-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A new twist in TCR diversity revealed by a forbidden alphabeta TCR.
J.Mol.Biol., 375, 2008
3U43
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CRYSTAL STRUCTURE OF THE COLICIN E2 DNASE-IM2 COMPLEX
Descriptor:Colicin-E2 immunity protein, Colicin-E2, ZINC ION, ...
Authors:Wojdyla, J.A., Kleanthous, C.
Deposit date:2011-10-07
Release date:2012-03-21
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structure of the Ultra-High-Affinity Colicin E2 DNase-Im2 Complex.
J.Mol.Biol., 417, 2012
3VB8
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CRYSTAL STRUCTURE OF ENGINEERED PROTEIN, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR43
Descriptor:Engineered protein, SULFATE ION
Authors:Seetharaman, J., Su, M., Procko, E., Baker, D., Ciccosanti, C., Sahdev, S., Xiao, R., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-12-31
Release date:2012-06-06
Last modified:2013-09-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Computational design of a protein-based enzyme inhibitor.
J.Mol.Biol., 425, 2013
4EEF
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CRYSTAL STRUCTURE OF THE DESIGNED INHIBITOR PROTEIN F-HB80.4 IN COMPLEX WITH THE 1918 INFLUENZA VIRUS HEMAGGLUTININ.
Descriptor:Hemagglutinin HA1 chain, Hemagglutinin HA2 chain, F-HB80.4, ...
Authors:Dreyfus, C., Wilson, I.A.
Deposit date:2012-03-28
Release date:2012-06-27
Method:X-RAY DIFFRACTION (2.704 Å)
Cite:Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing.
Nat.Biotechnol., 30, 2012
5D8I
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ENGINEERING THE SPECIES-SPECIFICITY OF AN INHIBITORY ANTIBODY TARGETING A MODULATOR OF TUMOR STROMA
Descriptor:Sulfhydryl oxidase 1
Authors:Grossman, I., Fass, D.
Deposit date:2015-08-17
Release date:2016-02-10
Last modified:2016-03-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Overcoming a species-specificity barrier in development of an inhibitory antibody targeting a modulator of tumor stroma.
Protein Eng.Des.Sel., 29, 2016
5D93
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OXIDOREDUCTASE FRAGMENT OF MOUSE QSOX1 IN COMPLEX WITH A FAB FRAGMENT FROM A MOUSE QSOX1-SPECIFIC ANTIBODY
Descriptor:Sulfhydryl oxidase 1, Heavy Chain of Fab Fragment from a Mouse QSOX1-Specific Antibody, Light Chain of Fab Fragment from a Mouse QSOX1-Specific Antibody
Authors:Grossman, I., Fass, D.
Deposit date:2015-08-18
Release date:2016-02-10
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Overcoming a species-specificity barrier in development of an inhibitory antibody targeting a modulator of tumor stroma.
Protein Eng.Des.Sel., 29, 2016
5D96
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OXIDOREDUCTASE FRAGMENT OF MOUSE QSOX1 IN COMPLEX WITH A FAB FRAGMENT FROM AN ANTIBODY TARGETING MOUSE AND HUMAN QSOX1
Descriptor:Sulfhydryl oxidase 1, Light chain of Fab fragment from an antibody targeting mouse and human QSOX1, Heavy chain of Fab fragment from an antibody targeting mouse and human QSOX1
Authors:Fass, D., Grossman, I.
Deposit date:2015-08-18
Release date:2016-02-10
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Overcoming a species-specificity barrier in development of an inhibitory antibody targeting a modulator of tumor stroma.
Protein Eng.Des.Sel., 29, 2016
6GVS
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ENGINEERED GLYCOLYL-COA REDUCTASE COMPRISING 8 MUTATIONS WITH BOUND NADP+
Descriptor:Aldehyde dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, POTASSIUM ION
Authors:Zarzycki, J., Trudeau, D., Scheffen, M., Erb, T.J., Tawfik, D.S.
Deposit date:2018-06-21
Release date:2018-11-28
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (2.579 Å)
Cite:Design and in vitro realization of carbon-conserving photorespiration.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018