Author results

1AU5
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SOLUTION STRUCTURE OF INTRASTRAND CISPLATIN-CROSSLINKED DNA OCTAMER D(CCTG*G*TCC):D(GGACCAGG), NMR, MINIMIZED AVERAGE STRUCTURE
分子名称:DNA (5'-D(*CP*CP*TP*GP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*CP*AP*GP*G)-3'), Cisplatin
著者Yang, D., Van Boom, S.S.G.E., Reedijk, J., Van Boom, J.H., Wang, A.H.-J.
登録日1997-09-11
公開日1998-02-25
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Structure and isomerization of an intrastrand cisplatin-cross-linked octamer DNA duplex by NMR analysis.
Biochemistry, 34, 1995
1AU6
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SOLUTION STRUCTURE OF DNA D(CATGCATG) INTERSTRAND-CROSSLINKED BY BISPLATIN COMPOUND (1,1/T,T), NMR, MINIMIZED AVERAGE STRUCTURE
分子名称:DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3'), BIS(TRANS-PLATINUM ETHYLENEDIAMINE DIAMINE CHLORO)COMPLEX
著者Yang, D., Van Boom, S.S.G.E., Reedijk, J., Van Boom, J.H., Farrell, N., Wang, A.H.-J.
登録日1997-09-11
公開日1998-02-25
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献A novel DNA structure induced by the anticancer bisplatinum compound crosslinked to a GpC site in DNA.
Nat.Struct.Biol., 2, 1995
4KUD
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CRYSTAL STRUCTURE OF N-TERMINAL ACETYLATED SIR3 BAH DOMAIN D205N MUTANT IN COMPLEX WITH YEAST NUCLEOSOME CORE PARTICLE
分子名称:Histone H3, Histone H4, Histone H2A.2, ...
著者Yang, D., Fang, Q., Wang, M., Ren, R., Wang, H., He, M., Sun, Y., Yang, N., Xu, R.M.
登録日2013-05-22
公開日2013-08-07
最終更新日2013-09-04
実験手法X-RAY DIFFRACTION (3.203 Å)
主引用文献N alpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain
Nat.Struct.Mol.Biol., 2013
4KUI
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CRYSTAL STRUCTURE OF N-TERMINAL ACETYLATED YEAST SIR3 BAH DOMAIN
分子名称:Regulatory protein SIR3, ISOPROPYL ALCOHOL, ACETIC ACID
著者Yang, D., Fang, Q., Wang, M., Ren, R., Wang, H., He, M., Sun, Y., Yang, N., Xu, R.M.
登録日2013-05-22
公開日2013-08-07
最終更新日2013-09-04
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献N alpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain
Nat.Struct.Mol.Biol., 2013
4KUL
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CRYSTAL STRUCTURE OF N-TERMINAL ACETYLATED YEAST SIR3 BAH DOMAIN V83P MUTANT
分子名称:Regulatory protein SIR3
著者Yang, D., Fang, Q., Wang, M., Ren, R., Wang, H., He, M., Sun, Y., Yang, N., Xu, R.M.
登録日2013-05-22
公開日2013-08-07
最終更新日2013-09-04
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献N alpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain
Nat.Struct.Mol.Biol., 2013
4WGL
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CRYSTAL STRUCTURE OF A GROEL D83A/R197A DOUBLE MUTANT
分子名称:60 kDa chaperonin
著者Yang, D., Fei, X., LaRonde, N.A., Beckett, D., Lund, P.A., Lorimer, G.H.
登録日2014-09-19
公開日2015-09-30
実験手法X-RAY DIFFRACTION (3.13 Å)
主引用文献Crystal structure of a GroEL D83A/R197A double mutant
To Be Published
1KKH
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CRYSTAL STRUCTURE OF THE METHANOCOCCUS JANNASCHII MEVALONATE KINASE
分子名称:Mevalonate Kinase, 1,4-DIETHYLENE DIOXIDE
著者Yang, D., Shipman, L.W., Roessner, C.A., Scott, A.I., Sacchettini, J.C.
登録日2001-12-08
公開日2002-03-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the Methanococcus jannaschii mevalonate kinase, a member of the GHMP kinase superfamily.
J.Biol.Chem., 277, 2002
3EAB
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CRYSTAL STRUCTURE OF SPASTIN MIT IN COMPLEX WITH ESCRT III
分子名称:Spastin, CHMP1b
著者Yang, D., Rimanchi, N., Renvoise, B., Lippincott-Schwartz, J., Blackstone, C., Hurley, J.H.
登録日2008-08-25
公開日2008-11-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for midbody targeting of spastin by the ESCRT-III protein CHMP1B.
Nat.Struct.Mol.Biol., 15, 2008
3MHV
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CRYSTAL STRUCTURE OF VPS4 AND VTA1
分子名称:Vacuolar protein sorting-associated protein 4, Vacuolar protein sorting-associated protein VTA1
著者Yang, D., Hurley, J.H.
登録日2010-04-09
公開日2010-10-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural role of the Vps4-Vta1 interface in ESCRT-III recycling
Structure, 18, 2010
2LUU
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NMR SOLUTION STRUCTURE OF MIDKINE-B, MDKB
分子名称:Midkine-related growth factor Mdk2
著者Yang, D., Lim, J., Meng, D.
登録日2012-06-21
公開日2013-05-01
実験手法SOLUTION NMR
主引用文献Structure-function analysis of full-length midkine reveals novel residues important for heparin binding and zebrafish embryogenesis.
Biochem.J., 451, 2013
2MQA
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3D STRUCTURE OF RP DOMAIN OF MISP
分子名称:Minor ampullate fibroin 1
著者Yang, D., Gao, Z.
登録日2014-06-16
公開日2015-06-17
実験手法SOLUTION NMR
主引用文献3D structure of RP domain of MiSp
To be Published
2M0M
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STRUCTURAL CHARACTERIZATION OF MINOR AMPULLATE SPIDROIN DOMAINS AND THEIR DISTINCT ROLES IN FIBROIN SOLUBILITY AND FIBER FORMATION
分子名称:Minor ampullate fibroin 1
著者Yang, D., Gao, Z., Lin, Z., Huang, W., Lai, C., Fan, J.
登録日2012-10-30
公開日2013-03-27
実験手法SOLUTION NMR
主引用文献Structural characterization of minor ampullate spidroin domains and their distinct roles in fibroin solubility and fiber formation
Plos One, 8, 2013
6DZZ
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CRYO-EM STRUCTURE OF THE WILD-TYPE HUMAN SEROTONIN TRANSPORTER IN COMPLEX WITH IBOGAINE AND 15B8 FAB IN THE INWARD CONFORMATION
分子名称:Sodium-dependent serotonin transporter, 15B8 antibody heavy chain, 15B8 antibody light chain, ...
著者Yang, D., Coleman, J.A., Gouaux, E.
登録日2018-07-05
公開日2019-04-24
最終更新日2019-11-20
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transport.
Nature, 569, 2019
5XEZ
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STRUCTURE OF THE FULL-LENGTH GLUCAGON CLASS B G PROTEIN-COUPLED RECEPTOR
分子名称:Glucagon receptor,Endolysin,Glucagon receptor, Antibody, mAb1, ...
著者Zhang, H., Qiao, A., Yang, D., Yang, L., Dai, A., de Graaf, C., Reedtz-Runge, S., Dharmarajan, V., Zhang, H., Han, G.W., Grant, T., Sierra, R., Weierstall, U., Nelson, G., Liu, W., Wu, Y., Ma, L., Cai, X., Lin, G., Wu, X., Geng, Z., Dong, Y., Song, G., Griffin, P., Lau, J., Cherezov, V., Yang, H., Hanson, M., Stevens, R., Jiang, H., Wang, M., Zhao, Q., Wu, B.
登録日2017-04-06
公開日2017-05-24
最終更新日2017-06-14
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of the full-length glucagon class B G-protein-coupled receptor.
Nature, 546, 2017
5XF1
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STRUCTURE OF THE FULL-LENGTH GLUCAGON CLASS B G PROTEIN-COUPLED RECEPTOR
分子名称:Glucagon receptor,Endolysin,Glucagon receptor, Antibody mAb1 Heavy chain, Antibody mAb1 Light chain, ...
著者Zhang, H., Qiao, A., Yang, D., Yang, L., Dai, A., de Graaf, C., Reedtz-Runge, S., Dharmarajan, V., Zhang, H., Han, G.W., Grant, T., Sierra, R., Weierstall, U., Nelson, G., Liu, W., Wu, Y., Ma, L., Cai, X., Lin, G., Wu, X., Geng, Z., Dong, Y., Song, G., Griffin, P., Lau, J., Cherezov, V., Yang, H., Hanson, M., Stevens, R., Jiang, H., Wang, M., Zhao, Q., Wu, B.
登録日2017-04-06
公開日2017-05-24
最終更新日2017-06-14
実験手法X-RAY DIFFRACTION (3.19 Å)
主引用文献Structure of the full-length glucagon class B G-protein-coupled receptor.
Nature, 546, 2017
5YQZ
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STRUCTURE OF THE GLUCAGON RECEPTOR IN COMPLEX WITH A GLUCAGON ANALOGUE
分子名称:Glucagon receptor,Endolysin,Glucagon receptor, Glucagon analogue, N-ACETYL-D-GLUCOSAMINE, ...
著者Zhang, H., Qiao, A., Yang, L., VAN EPS, N., Frederiksen, K., Yang, D., Dai, A., Cai, X., Zhang, H., Yi, C., Can, C., He, L., Yang, H., Lau, J., Ernst, O., Hanson, M., Stevens, R., Wang, M., Seedtz-Runge, S., Jiang, H., Zhao, Q., Wu, B.
登録日2017-11-08
公開日2018-01-17
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of the glucagon receptor in complex with a glucagon analogue.
Nature, 553, 2018
2KAP
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SOLUTION STRUCTURE OF DLC1-SAM
分子名称:Rho GTPase-activating protein 7
著者Yang, S., Yang, D.
登録日2008-11-12
公開日2009-10-20
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Characterization of DLC1-SAM equilibrium unfolding at the amino acid residue level
Biochemistry, 48, 2009
4NND
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STRUCTURAL BASIS OF PTPN18 FINGERPRINT ON DISTINCT HER2 TYROSINE PHOSPHORYLATION SITES
分子名称:Tyrosine-protein phosphatase non-receptor type 18, Receptor tyrosine-protein kinase erbB-2
著者Wang, H., Yang, F., Yang, D., Du, Y.
登録日2013-11-17
公開日2014-11-19
実験手法X-RAY DIFFRACTION (2.502 Å)
主引用文献Structural basis of PTPN18 fingerprint on distinct HER2 tyrosine phosphorylation sites
To be Published
2K3N
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SOLUTION STRUCTURE OF THE TYPE 1 REPETITIVE DOMAIN (TUSP1-RP1) OF THE EGG CASE SILK FROM NEPHILA ANTIPODIANA
分子名称:TuSp1
著者Lin, Z., Huang, W., Fan, J., Yang, D.
登録日2008-05-14
公開日2009-06-02
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structure of eggcase silk protein and its implications for silk fiber formation
Proc.Natl.Acad.Sci.USA, 106, 2009
2K3O
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SOLUTION STRUCTURE OF THE TYPE 2 REPETITIVE DOMAIN (TUSP1-RP2) OF THE EGG CASE SILK FROM NEPHILA ANTIPODIANA
分子名称:TuSp1
著者Lin, Z., Huang, W., Fan, J., Yang, D.
登録日2008-05-14
公開日2009-06-02
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structure of eggcase silk protein and its implications for silk fiber formation
Proc.Natl.Acad.Sci.USA, 106, 2009
1S51
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THR24SER BACTERIORHODOPSIN
分子名称:bacteriorhodopsin, RETINAL
著者Yohannan, S., Faham, S., Yang, D., Grosfeld, D., Chamberlain, A.K., Bowie, J.U.
登録日2004-01-19
公開日2004-03-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing
J.Am.Chem.Soc., 126, 2004
1S52
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THR24VAL BACTERIORHODOPSIN
分子名称:bacteriorhodopsin, RETINAL
著者Yohannan, S., Faham, S., Yang, D., Grosfeld, D., Chamberlain, A.K., Bowie, J.U.
登録日2004-01-19
公開日2004-03-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing
J.Am.Chem.Soc., 126, 2004
1S53
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THR46SER BACTERIORHODOPSIN
分子名称:bacteriorhodopsin, RETINAL
著者Yohannan, S., Faham, S., Yang, D., Grosfeld, D., Chamberlain, A.K., Bowie, J.U.
登録日2004-01-19
公開日2004-03-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing
J.Am.Chem.Soc., 126, 2004
1S54
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THR24ALA BACTERIORHODOPSIN
分子名称:bacteriorhodopsin, RETINAL
著者Yohannan, S., Faham, S., Yang, D., Grosfeld, D., Chamberlain, A.K., Bowie, J.U.
登録日2004-01-19
公開日2004-03-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing
J.Am.Chem.Soc., 126, 2004
1XAV
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MAJOR G-QUADRUPLEX STRUCTURE FORMED IN HUMAN C-MYC PROMOTER, A MONOMERIC PARALLEL-STRANDED QUADRUPLEX
分子名称:5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3', POTASSIUM ION
著者Ambrus, A., Chen, D., Dai, J., Jones, R.A., Yang, D.
登録日2004-08-26
公開日2005-02-01
最終更新日2014-09-17
実験手法SOLUTION NMR
主引用文献Solution structure of the biologically relevant G-Quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization.
Biochemistry, 44, 2005