Author results

4KUD
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CRYSTAL STRUCTURE OF N-TERMINAL ACETYLATED SIR3 BAH DOMAIN D205N MUTANT IN COMPLEX WITH YEAST NUCLEOSOME CORE PARTICLE
Descriptor:Histone H3, Histone H4, Histone H2A.2, ...
Authors:Yang, D., Fang, Q., Wang, M., Ren, R., Wang, H., He, M., Sun, Y., Yang, N., Xu, R.M.
Deposit date:2013-05-22
Release date:2013-08-07
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (3.203 Å)
Cite:N alpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain
Nat.Struct.Mol.Biol., 2013
4KUI
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CRYSTAL STRUCTURE OF N-TERMINAL ACETYLATED YEAST SIR3 BAH DOMAIN
Descriptor:Regulatory protein SIR3, ISOPROPYL ALCOHOL, ACETIC ACID
Authors:Yang, D., Fang, Q., Wang, M., Ren, R., Wang, H., He, M., Sun, Y., Yang, N., Xu, R.M.
Deposit date:2013-05-22
Release date:2013-08-07
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:N alpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain
Nat.Struct.Mol.Biol., 2013
4KUL
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CRYSTAL STRUCTURE OF N-TERMINAL ACETYLATED YEAST SIR3 BAH DOMAIN V83P MUTANT
Descriptor:Regulatory protein SIR3
Authors:Yang, D., Fang, Q., Wang, M., Ren, R., Wang, H., He, M., Sun, Y., Yang, N., Xu, R.M.
Deposit date:2013-05-22
Release date:2013-08-07
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:N alpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain
Nat.Struct.Mol.Biol., 2013
1AU5
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SOLUTION STRUCTURE OF INTRASTRAND CISPLATIN-CROSSLINKED DNA OCTAMER D(CCTG*G*TCC):D(GGACCAGG), NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:DNA (5'-D(*CP*CP*TP*GP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*CP*AP*GP*G)-3'), Cisplatin
Authors:Yang, D., Van Boom, S.S.G.E., Reedijk, J., Van Boom, J.H., Wang, A.H.-J.
Deposit date:1997-09-11
Release date:1998-02-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and isomerization of an intrastrand cisplatin-cross-linked octamer DNA duplex by NMR analysis.
Biochemistry, 34, 1995
1AU6
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SOLUTION STRUCTURE OF DNA D(CATGCATG) INTERSTRAND-CROSSLINKED BY BISPLATIN COMPOUND (1,1/T,T), NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3'), BIS(TRANS-PLATINUM ETHYLENEDIAMINE DIAMINE CHLORO)COMPLEX
Authors:Yang, D., Van Boom, S.S.G.E., Reedijk, J., Van Boom, J.H., Farrell, N., Wang, A.H.-J.
Deposit date:1997-09-11
Release date:1998-02-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel DNA structure induced by the anticancer bisplatinum compound crosslinked to a GpC site in DNA.
Nat.Struct.Biol., 2, 1995
4WGL
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CRYSTAL STRUCTURE OF A GROEL D83A/R197A DOUBLE MUTANT
Descriptor:60 kDa chaperonin
Authors:Yang, D., Fei, X., LaRonde, N.A., Beckett, D., Lund, P.A., Lorimer, G.H.
Deposit date:2014-09-19
Release date:2015-09-30
Method:X-RAY DIFFRACTION (3.13 Å)
Cite:Crystal structure of a GroEL D83A/R197A double mutant
To Be Published
1KKH
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CRYSTAL STRUCTURE OF THE METHANOCOCCUS JANNASCHII MEVALONATE KINASE
Descriptor:Mevalonate Kinase, 1,4-DIETHYLENE DIOXIDE
Authors:Yang, D., Shipman, L.W., Roessner, C.A., Scott, A.I., Sacchettini, J.C.
Deposit date:2001-12-08
Release date:2002-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Methanococcus jannaschii mevalonate kinase, a member of the GHMP kinase superfamily.
J.Biol.Chem., 277, 2002
3EAB
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CRYSTAL STRUCTURE OF SPASTIN MIT IN COMPLEX WITH ESCRT III
Descriptor:Spastin, CHMP1b
Authors:Yang, D., Rimanchi, N., Renvoise, B., Lippincott-Schwartz, J., Blackstone, C., Hurley, J.H.
Deposit date:2008-08-25
Release date:2008-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for midbody targeting of spastin by the ESCRT-III protein CHMP1B.
Nat.Struct.Mol.Biol., 15, 2008
3MHV
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CRYSTAL STRUCTURE OF VPS4 AND VTA1
Descriptor:Vacuolar protein sorting-associated protein 4, Vacuolar protein sorting-associated protein VTA1
Authors:Yang, D., Hurley, J.H.
Deposit date:2010-04-09
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural role of the Vps4-Vta1 interface in ESCRT-III recycling
Structure, 18, 2010
6DZZ
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CRYO-EM STRUCTURE OF THE WILD-TYPE HUMAN SEROTONIN TRANSPORTER IN COMPLEX WITH IBOGAINE AND 15B8 FAB IN THE INWARD CONFORMATION
Descriptor:Sodium-dependent serotonin transporter, 15B8 antibody heavy chain, 15B8 antibody light chain, ...
Authors:Yang, D., Coleman, J.A., Gouaux, E.
Deposit date:2018-07-05
Release date:2019-04-24
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures of human serotonin transporter in complex with ibogaine
To be Published
2LUU
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NMR SOLUTION STRUCTURE OF MIDKINE-B, MDKB
Descriptor:Midkine-related growth factor Mdk2
Authors:Yang, D., Lim, J., Meng, D.
Deposit date:2012-06-21
Release date:2013-05-01
Method:SOLUTION NMR
Cite:Structure-function analysis of full-length midkine reveals novel residues important for heparin binding and zebrafish embryogenesis.
Biochem.J., 451, 2013
2MQA
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3D STRUCTURE OF RP DOMAIN OF MISP
Descriptor:Minor ampullate fibroin 1
Authors:Yang, D., Gao, Z.
Deposit date:2014-06-16
Release date:2015-06-17
Method:SOLUTION NMR
Cite:3D structure of RP domain of MiSp
To be Published
2M0M
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STRUCTURAL CHARACTERIZATION OF MINOR AMPULLATE SPIDROIN DOMAINS AND THEIR DISTINCT ROLES IN FIBROIN SOLUBILITY AND FIBER FORMATION
Descriptor:Minor ampullate fibroin 1
Authors:Yang, D., Gao, Z., Lin, Z., Huang, W., Lai, C., Fan, J.
Deposit date:2012-10-30
Release date:2013-03-27
Method:SOLUTION NMR
Cite:Structural characterization of minor ampullate spidroin domains and their distinct roles in fibroin solubility and fiber formation
Plos One, 8, 2013
6DZY
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CRYO-EM STRUCTURE OF THE TS2-ACTIVE HUMAN SEROTONIN TRANSPORTER IN COMPLEX WITH 15B8 FAB AND 8B6 SCFV BOUND TO IBOGAINE
Descriptor:Sodium-dependent serotonin transporter, 15B8 antibody heavy chain, 15B8 antibody light chain, ...
Authors:Coleman, J.A., Yang, D., Gouaux, E.
Deposit date:2018-07-05
Release date:2019-04-24
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Cryo-EM structure of the human serotonin transporter in complex with ibogaine
To be Published
5XEZ
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STRUCTURE OF THE FULL-LENGTH GLUCAGON CLASS B G PROTEIN-COUPLED RECEPTOR
Descriptor:Glucagon receptor,Endolysin,Glucagon receptor, Antibody, mAb1, ...
Authors:Zhang, H., Qiao, A., Yang, D., Yang, L., Dai, A., de Graaf, C., Reedtz-Runge, S., Dharmarajan, V., Zhang, H., Han, G.W., Grant, T., Sierra, R., Weierstall, U., Nelson, G., Liu, W., Wu, Y., Ma, L., Cai, X., Lin, G., Wu, X., Geng, Z., Dong, Y., Song, G., Griffin, P., Lau, J., Cherezov, V., Yang, H., Hanson, M., Stevens, R., Jiang, H., Wang, M., Zhao, Q., Wu, B.
Deposit date:2017-04-06
Release date:2017-05-24
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the full-length glucagon class B G-protein-coupled receptor.
Nature, 546, 2017
5XF1
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STRUCTURE OF THE FULL-LENGTH GLUCAGON CLASS B G PROTEIN-COUPLED RECEPTOR
Descriptor:Glucagon receptor,Endolysin,Glucagon receptor, Antibody mAb1 Heavy chain, Antibody mAb1 Light chain, ...
Authors:Zhang, H., Qiao, A., Yang, D., Yang, L., Dai, A., de Graaf, C., Reedtz-Runge, S., Dharmarajan, V., Zhang, H., Han, G.W., Grant, T., Sierra, R., Weierstall, U., Nelson, G., Liu, W., Wu, Y., Ma, L., Cai, X., Lin, G., Wu, X., Geng, Z., Dong, Y., Song, G., Griffin, P., Lau, J., Cherezov, V., Yang, H., Hanson, M., Stevens, R., Jiang, H., Wang, M., Zhao, Q., Wu, B.
Deposit date:2017-04-06
Release date:2017-05-24
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Structure of the full-length glucagon class B G-protein-coupled receptor.
Nature, 546, 2017
5YQZ
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STRUCTURE OF THE GLUCAGON RECEPTOR IN COMPLEX WITH A GLUCAGON ANALOGUE
Descriptor:Glucagon receptor,Endolysin,Glucagon receptor, Glucagon analogue, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Zhang, H., Qiao, A., Yang, L., VAN EPS, N., Frederiksen, K., Yang, D., Dai, A., Cai, X., Zhang, H., Yi, C., Can, C., He, L., Yang, H., Lau, J., Ernst, O., Hanson, M., Stevens, R., Wang, M., Seedtz-Runge, S., Jiang, H., Zhao, Q., Wu, B.
Deposit date:2017-11-08
Release date:2018-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the glucagon receptor in complex with a glucagon analogue.
Nature, 553, 2018
2KAP
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SOLUTION STRUCTURE OF DLC1-SAM
Descriptor:Rho GTPase-activating protein 7
Authors:Yang, S., Yang, D.
Deposit date:2008-11-12
Release date:2009-10-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Characterization of DLC1-SAM equilibrium unfolding at the amino acid residue level
Biochemistry, 48, 2009
4NND
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STRUCTURAL BASIS OF PTPN18 FINGERPRINT ON DISTINCT HER2 TYROSINE PHOSPHORYLATION SITES
Descriptor:Tyrosine-protein phosphatase non-receptor type 18, Receptor tyrosine-protein kinase erbB-2
Authors:Wang, H., Yang, F., Yang, D., Du, Y.
Deposit date:2013-11-17
Release date:2014-11-19
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structural basis of PTPN18 fingerprint on distinct HER2 tyrosine phosphorylation sites
To be Published
1S51
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THR24SER BACTERIORHODOPSIN
Descriptor:bacteriorhodopsin, RETINAL
Authors:Yohannan, S., Faham, S., Yang, D., Grosfeld, D., Chamberlain, A.K., Bowie, J.U.
Deposit date:2004-01-19
Release date:2004-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing
J.Am.Chem.Soc., 126, 2004
1S52
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THR24VAL BACTERIORHODOPSIN
Descriptor:bacteriorhodopsin, RETINAL
Authors:Yohannan, S., Faham, S., Yang, D., Grosfeld, D., Chamberlain, A.K., Bowie, J.U.
Deposit date:2004-01-19
Release date:2004-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing
J.Am.Chem.Soc., 126, 2004
1S53
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THR46SER BACTERIORHODOPSIN
Descriptor:bacteriorhodopsin, RETINAL
Authors:Yohannan, S., Faham, S., Yang, D., Grosfeld, D., Chamberlain, A.K., Bowie, J.U.
Deposit date:2004-01-19
Release date:2004-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing
J.Am.Chem.Soc., 126, 2004
1S54
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THR24ALA BACTERIORHODOPSIN
Descriptor:bacteriorhodopsin, RETINAL
Authors:Yohannan, S., Faham, S., Yang, D., Grosfeld, D., Chamberlain, A.K., Bowie, J.U.
Deposit date:2004-01-19
Release date:2004-03-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A C(alpha)-H.O Hydrogen Bond in a Membrane Protein Is Not Stabilizing
J.Am.Chem.Soc., 126, 2004
2K3N
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SOLUTION STRUCTURE OF THE TYPE 1 REPETITIVE DOMAIN (TUSP1-RP1) OF THE EGG CASE SILK FROM NEPHILA ANTIPODIANA
Descriptor:TuSp1
Authors:Lin, Z., Huang, W., Fan, J., Yang, D.
Deposit date:2008-05-14
Release date:2009-06-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of eggcase silk protein and its implications for silk fiber formation
Proc.Natl.Acad.Sci.USA, 106, 2009
2K3O
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SOLUTION STRUCTURE OF THE TYPE 2 REPETITIVE DOMAIN (TUSP1-RP2) OF THE EGG CASE SILK FROM NEPHILA ANTIPODIANA
Descriptor:TuSp1
Authors:Lin, Z., Huang, W., Fan, J., Yang, D.
Deposit date:2008-05-14
Release date:2009-06-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of eggcase silk protein and its implications for silk fiber formation
Proc.Natl.Acad.Sci.USA, 106, 2009