Author results

1NPE
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CRYSTAL STRUCTURE OF NIDOGEN/LAMININ COMPLEX
Descriptor:nidogen, Laminin gamma-1 chain, CADMIUM ION
Authors:Takagi, J., Yang, Y.T., Liu, J.-H., Wang, J.-H., Springer, T.A.
Deposit date:2003-01-17
Release date:2003-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Complex between nidogen and laminin fragments reveals a paradigmatic beta-propeller interface
Nature, 424, 2003
3WSX
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SORLA VPS10P DOMAIN IN LIGAND-FREE FORM
Descriptor:Sortilin-related receptor, N-ACETYL-D-GLUCOSAMINE, PHOSPHATE ION, ...
Authors:Kitago, Y., Nakata, Z., Nagae, M., Nogi, T., Takagi, J.
Deposit date:2014-03-30
Release date:2015-02-04
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for amyloidogenic peptide recognition by sorLA
Nat.Struct.Mol.Biol., 2015
3WSY
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SORLA VPS10P DOMAIN IN COMPLEX WITH ITS OWN PROPEPTIDE FRAGMENT
Descriptor:Sortilin-related receptor, peptide from Sortilin-related receptor, N-ACETYL-D-GLUCOSAMINE
Authors:Kitago, Y., Nakata, Z., Nagae, M., Nogi, T., Takagi, J.
Deposit date:2014-03-30
Release date:2015-02-04
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural basis for amyloidogenic peptide recognition by sorLA
Nat.Struct.Mol.Biol., 2015
3WSZ
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SORLA VPS10P DOMAIN IN COMPLEX WITH ABETA-DERIVED PEPTIDE
Descriptor:Sortilin-related receptor, 10-mer peptide, N-ACETYL-D-GLUCOSAMINE
Authors:Kitago, Y., Nakata, Z., Nagae, M., Nogi, T., Takagi, J.
Deposit date:2014-03-30
Release date:2015-02-04
Method:X-RAY DIFFRACTION (3.201 Å)
Cite:Structural basis for amyloidogenic peptide recognition by sorLA
Nat.Struct.Mol.Biol., 2015
1L0Q
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TANDEM YVTN BETA-PROPELLER AND PKD DOMAINS FROM AN ARCHAEAL SURFACE LAYER PROTEIN
Descriptor:Surface layer protein
Authors:Jing, H., Takagi, J., Liu, J.-H., Lindgren, S., Zhang, R.-G., Joachimiak, A., Wang, J.-H., Springer, T.A.
Deposit date:2002-02-12
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Archaeal Surface Layer Proteins Contain beta Propeller, PKD, and beta Helix Domains and Are Related to Metazoan Cell Surface Proteins.
Structure, 10, 2002
3GHM
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CRYSTAL STRUCTURE OF THE EXOSITE-CONTAINING FRAGMENT OF HUMAN ADAMTS13 (FORM-1)
Descriptor:A disintegrin and metalloproteinase with thrombospondin motifs 13, N-ACETYL-D-GLUCOSAMINE, ALPHA-L-FUCOSE, ...
Authors:Akiyama, M., Takeda, S., Kokame, K., Takagi, J., Miyata, T.
Deposit date:2009-03-04
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of the non-catalytic domains of ADAMTS13 reveal multiple discontinuous exosites for von Willebrand factor
To be Published
3GHN
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CRYSTAL STRUCTURE OF THE EXOSITE-CONTAINING FRAGMENT OF HUMAN ADAMTS13 (FORM-2)
Descriptor:A disintegrin and metalloproteinase with thrombospondin motifs 13, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Akiyama, M., Takeda, S., Kokame, K., Takagi, J., Miyata, T.
Deposit date:2009-03-04
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of the non-catalytic domains of ADAMTS13 reveal multiple discontinuous exosites for von Willebrand factor
To be Published
3VN4
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CRYSTAL STRUCTURE OF THE EXOSITE-CONTAINING FRAGMENT OF HUMAN ADAMTS13 (P475S MUTANT)
Descriptor:A disintegrin and metalloproteinase with thrombospondin motifs 13, N-ACETYL-D-GLUCOSAMINE, ALPHA-L-FUCOSE, ...
Authors:Nakayama, D., Akiyama, M., Takeda, S., Kokame, K., Takagi, J., Miyata, T.
Deposit date:2011-12-21
Release date:2012-12-26
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural analysis and biochemical studies of ADAMTS13 P475S mutant
To be Published
3NKM
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CRYSTAL STRUCTURE OF MOUSE AUTOTAXIN
Descriptor:Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Nishimasu, H., Ishitani, R., Mihara, E., Takagi, J., Aoki, J., Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKN
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CRYSTAL STRUCTURE OF MOUSE AUTOTAXIN IN COMPLEX WITH 14:0-LPA
Descriptor:Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Nishimasu, H., Ishitani, R., Mihara, E., Takagi, J., Aoki, J., Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKO
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CRYSTAL STRUCTURE OF MOUSE AUTOTAXIN IN COMPLEX WITH 16:0-LPA
Descriptor:Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Nishimasu, H., Ishitani, R., Mihara, E., Takagi, J., Aoki, J., Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKP
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CRYSTAL STRUCTURE OF MOUSE AUTOTAXIN IN COMPLEX WITH 18:1-LPA
Descriptor:Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Nishimasu, H., Ishitani, R., Mihara, E., Takagi, J., Aoki, J., Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.751 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKQ
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CRYSTAL STRUCTURE OF MOUSE AUTOTAXIN IN COMPLEX WITH 18:3-LPA
Descriptor:Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Nishimasu, H., Ishitani, R., Mihara, E., Takagi, J., Aoki, J., Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKR
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CRYSTAL STRUCTURE OF MOUSE AUTOTAXIN IN COMPLEX WITH 22:6-LPA
Descriptor:Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Nishimasu, H., Ishitani, R., Mihara, E., Takagi, J., Aoki, J., Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
2DDU
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CRYSTAL STRUCTURE OF THE THIRD REPEAT DOMAIN OF REELIN
Descriptor:reelin, CALCIUM ION, CHLORIDE ION, ...
Authors:Nogi, T., Yasui, N., Takagi, J.
Deposit date:2006-02-03
Release date:2006-09-26
Last modified:2011-10-05
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of a signaling-competent reelin fragment revealed by X-ray crystallography and electron tomography
Embo J., 25, 2006
5GKR
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CRYSTAL STRUCTURE OF SLE PATIENT-DERIVED ANTI-DNA ANTIBODY IN COMPLEX WITH OLIGONUCLEOTIDE
Descriptor:IgG2, Fab (heavy chain), lambda, ...
Authors:Arimori, T., Sakakibara, S., Kikutani, H., Takagi, J.
Deposit date:2016-07-05
Release date:2017-07-05
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus
Sci Rep, 7, 2017
5GKS
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CRYSTAL STRUCTURE OF SLE PATIENT-DERIVED ANTI-DNA ANTIBODY
Descriptor:IgG2, Fab (heavy chain), lambda, ...
Authors:Arimori, T., Sakakibara, S., Kikutani, H., Takagi, J.
Deposit date:2016-07-05
Release date:2017-07-05
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus
Sci Rep, 7, 2017
1IJQ
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CRYSTAL STRUCTURE OF THE LDL RECEPTOR YWTD-EGF DOMAIN PAIR
Descriptor:LOW-DENSITY LIPOPROTEIN RECEPTOR
Authors:Jeon, H., Meng, W., Takagi, J., Eck, M.J., Springer, T.A., Blacklow, S.C.
Deposit date:2001-04-27
Release date:2001-05-23
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Implications for familial hypercholesterolemia from the structure of the LDL receptor YWTD-EGF domain pair.
Nat.Struct.Biol., 8, 2001
1L3Y
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INTEGRIN EGF-LIKE MODULE 3 FROM THE BETA-2 SUBUNIT
Descriptor:Integrin beta-2:CYSTEINE-RICH MODULE 3
Authors:Beglova, N., Blacklow, S.C., Takagi, J., Springer, T.A.
Deposit date:2002-03-03
Release date:2002-04-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Cysteine-rich module structure reveals a fulcrum for integrin rearrangement upon activation.
Nat.Struct.Biol., 9, 2002
1MQ8
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CRYSTAL STRUCTURE OF ALPHAL I DOMAIN IN COMPLEX WITH ICAM-1
Descriptor:intercellular adhesion molecule-1, Integrin alpha-L, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Shimaoka, M., Xiao, T., Liu, J.-H., Yang, Y., Dong, Y., Jun, C.-D., McCormack, A., Zhang, R., Joachimiak, A., Takagi, J., Wang, J.-H., Springer, T.A.
Deposit date:2002-09-15
Release date:2003-01-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation
Cell(Cambridge,Mass.), 112, 2003
1MQ9
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CRYSTAL STRUCTURE OF HIGH AFFINITY ALPHAL I DOMAIN WITH LIGAND MIMETIC CRYSTAL CONTACT
Descriptor:Integrin alpha-L, MANGANESE (II) ION
Authors:Shimaoka, M., Xiao, T., Liu, J.-H., Yang, Y., Dong, Y., Jun, C.-D., McCormack, A., Zhang, R., Joachimiak, A., Takagi, J., Wang, J.-H., Springer, T.A.
Deposit date:2002-09-15
Release date:2003-01-14
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation
Cell(Cambridge,Mass.), 112, 2003
1MQA
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CRYSTAL STRUCTURE OF HIGH AFFINITY ALPHAL I DOMAIN IN THE ABSENCE OF LIGAND OR METAL
Descriptor:Integrin alpha-L
Authors:Shimaoka, T., Xiao, T., Liu, J.-H., Yang, Y., Dong, Y., Jun, C.-D., Zhang, R., Takagi, J., Wang, J.-H., Springer, T.A.
Deposit date:2002-09-15
Release date:2003-01-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation
Cell(Cambridge,Mass.), 112, 2003
1TYE
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STRUCTURAL BASIS FOR ALLOSTERY IN INTEGRINS AND BINDING OF LIGAND-MIMETIC THERAPEUTICS TO THE PLATELET RECEPTOR FOR FIBRINOGEN
Descriptor:Integrin alpha-IIb, Integrin beta-3, CALCIUM ION, ...
Authors:Xiao, T., Takagi, J., Coller, B.S., Wang, J.-H., Springer, T.A.
Deposit date:2004-07-07
Release date:2004-10-12
Last modified:2014-09-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for allostery in integrins and binding to fibrinogen-mimetic therapeutics
Nature, 432, 2004
2E26
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CRYSTAL STRUCTURE OF TWO REPEAT FRAGMENT OF REELIN
Descriptor:Reelin, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Yasui, N., Nogi, T., Kitao, T., Takagi, J.
Deposit date:2006-11-08
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2ZOT
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CRYSTAL STRUCTURE OF HUMAN F-SPONDIN REELER DOMAIN (FRAGMENT 1)
Descriptor:Spondin-1
Authors:Nagae, M., Nogi, T., Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008