Author results

1G3V
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CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2
Descriptor:5'-D(*CP*GP*TP*GP*TP*AP*CP*AP*CP*G)-3', NICKEL (II) ION
Authors:Subirana, J.A., Abrescia, N.G.A.
Deposit date:2000-10-25
Release date:2002-01-11
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Nickel-guanine interactions in DNA: crystal structure of nickel-d[CGTGTACACG]2.
J.Biol.Inorg.Chem., 7, 2002
3GDD
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AN INVERTED ANTHRAQUINONE-DNA CRYSTAL STRUCTURE
Descriptor:5'-D(*(BRU)P*AP*GP*G)-3', MAGNESIUM ION, N,N'-(9,10-dioxo-9,10-dihydroanthracene-2,7-diyl)bis[2-(dimethylamino)acetamide]
Authors:Subirana, J.A., De Luchi, D., Wright, G., Gouyette, C.
Deposit date:2009-02-24
Release date:2010-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a stacked anthraquinone-DNA complex
Acta Crystallogr.,Sect.F, 66, 2010
1RSB
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X-RAY STUDY OF THE DNA OLIGOMER D(ATATAT) IN P65 SPACE GROUP
Descriptor:5'-D(*AP*TP*AP*TP*AP*T)-3'
Authors:Abrescia, N.G., Gonzalez, C., Gouyette, C., Subirana, J.A.
Deposit date:2003-12-09
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:X-ray and NMR studies of the DNA oligomer d(ATATAT): Hoogsteen base pairing in duplex DNA.
Biochemistry, 43, 2004
249D
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STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES
Descriptor:DNA (5'-D(*CP*GP*CP*TP*CP*TP*AP*GP*AP*GP*CP*G)-3'), CALCIUM ION
Authors:Urpi, L., Tereshko, V., Malinina, L., Huynh-Dinh, T., Subirana, J.A.
Deposit date:1996-02-22
Release date:1996-04-19
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes.
Nat.Struct.Biol., 3, 1996
250D
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STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES
Descriptor:DNA (5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3')
Authors:Urpi, L., Tereshko, V., Malinina, L., Huynh-Dinh, T., Subirana, J.A.
Deposit date:1996-02-22
Release date:1996-04-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes.
Nat.Struct.Biol., 3, 1996
192D
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RECOMBINATION-LIKE STRUCTURE OF D(CCGCGG)
Descriptor:DNA (5'-D(*CP*CP*GP*CP*GP*G)-3'), SODIUM ION
Authors:Malinina, L., Urpi, L., Salas, X., Huynh-Dinh, T., Subirana, J.A.
Deposit date:1994-09-22
Release date:1995-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Recombination-like structure of d(CCGCGG).
J.Mol.Biol., 243, 1994
1ENN
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SOLVENT ORGANIZATION IN AN OLIGONUCLEOTIDE CRYSTAL: THE STRUCTURE OF D(GCGAATTCG)2 AT ATOMIC RESOLUTION
Descriptor:DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3'), MAGNESIUM ION, CHLORIDE ION, ...
Authors:Soler-Lopez, M., Malinina, L., Subirana, J.A.
Deposit date:2000-03-21
Release date:2000-05-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:Solvent organization in an oligonucleotide crystal. The structure of d(GCGAATTCG)2 at atomic resolution.
J.Biol.Chem., 275, 2000
1G00
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ALTERNATION OF DNA AND SOLVENT LAYERS IN THE A FORM OF D(GGCGCC) OBTAINED BY ETHANOL CRYSTALLIZATION
Descriptor:5'-D(*GP*GP*CP*GP*CP*C)-3'
Authors:Urpi, L., Navaza, J., Subirana, J.A.
Deposit date:2000-10-05
Release date:2001-02-05
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Alternation of DNA and solvent layers in the A form of d(GGCGCC) obtained by ethanol crystallization.
J.Biomol.Struct.Dyn., 18, 2000
1G3X
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INTERCALATION OF AN 9ACRIDINE-PEPTIDE DRUG IN A DNA DODECAMER
Descriptor:5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', N(ALPHA)-(9-ACRIDINOYL)-TETRAARGININE-AMIDE, MAGNESIUM ION
Authors:Malinina, L., Soler-Lopez, M., Aymami, J., Subirana, J.A.
Deposit date:2000-10-25
Release date:2002-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Intercalation of an acridine-peptide drug in an AA/TT base step in the crystal structure of [d(CGCGAATTCGCG)](2) with six duplexes and seven Mg(2+) ions in the asymmetric unit.
Biochemistry, 41, 2002
1G6D
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STRUCTURE OF PEPTIDYL-D(CGCAATTGCG) IN THE PRESENCE OF ZINC IONS
Descriptor:PEPTIDYL-D(CGCAATTGCG), ZINC ION
Authors:Soler-Lopez, M., Malinina, L., Tereshko, V., Zarytova, V., Subirana, J.A.
Deposit date:2000-11-04
Release date:2002-04-19
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Interaction of zinc ions with d(CGCAATTGCG) in a 2.9 A resolution X-ray structure.
J.Biol.Inorg.Chem., 7, 2002
1GQU
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CRYSTAL STRUCTURE OF AN ALTERNATING A-T OLIGONUCLEOTIDE FRAGMENT WITH HOOGSTEEN BASE PAIRING
Descriptor:DNA (5'(*AP*TP*AP*UP*AP*T)-3')
Authors:Abrescia, N.G.A., Thompson, A., Huynh-Dinh, T., Subirana, J.A.
Deposit date:2001-12-05
Release date:2002-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of an Antiparallel DNA Fragment with Hoogsteen Base Pairing
Proc.Natl.Acad.Sci.USA, 99, 2002
1S23
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CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DECAMER CGCAATTGCG
Descriptor:5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3', COBALT (II) ION
Authors:Valls, N., Wright, G., Steiner, R.A., Murshudov, G.N., Subirana, J.A.
Deposit date:2004-01-08
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DNA variability in five crystal structures of d(CGCAATTGCG).
Acta Crystallogr.,Sect.D, 60, 2004
1S45
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CRYSTAL STRUCTURE ANALYSIS OF THE DNA QUADRUPLEX D(TGGGGT) S1
Descriptor:5'-D(*TP*GP*GP*GP*GP*T)-3', MAGNESIUM ION, THALLIUM (I) ION, ...
Authors:Caceres, C., Wright, G., Gouyette, C., Parkinson, G., Subirana, J.A.
Deposit date:2004-01-15
Release date:2004-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Thymine tetrad in d(TGGGGT) quadruplexes stabilized with Tl+1/Na+1 ions
Nucleic Acids Res., 32, 2004
1S47
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CRYSTAL STRUCTURE ANALYSIS OF THE DNA QUADRUPLEX D(TGGGGT)S2
Descriptor:5'-D(*TP*GP*GP*GP*GP*T)-3', SODIUM ION, THALLIUM (I) ION
Authors:Caceres, C., Wright, G., Gouyette, C., Parkinson, G., Subirana, J.A.
Deposit date:2004-01-15
Release date:2004-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Thymine tetrad in d(TGGGGT) quadruplexes stabilized with Tl+1/Na+1 ions
Nucleic Acids Res., 32, 2004
1S9B
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CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA GAATTCG
Descriptor:5'-D(*GP*AP*AP*TP*TP*CP*G)-3', NICKEL (II) ION
Authors:Valls, N., Uson, I., Gouyette, C., Subirana, J.A.
Deposit date:2004-02-04
Release date:2004-09-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:A cubic arrangement of DNA double helices based on nickel-guanine interactions
J.Am.Chem.Soc., 126, 2004
1XCS
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STRUCTURE OF OLIGONUCLEOTIDE/DRUG COMPLEX
Descriptor:5'-D(*CP*GP*TP*AP*CP*G)-3', COBALT (II) ION, 9-[(5-(ACETYLAMINO)-6-{[(1S,4R)-8-AMINO-4-[((2R)-6-AMINO-2-{2-[(1S)-5-AMINO-1-FORMYLPENTYL]HYDRAZINO}HEXANOYL)AMINO]-1-(4-AMINOBUTYL)-2,3-DIOXOOCTYL]AMINO}-6-OXOHEXYL)AMINO]-6-CHLORO-2-METHOXYACRIDINIUM, ...
Authors:Valls, N., Steiner, R.A., Wright, G., Murshudov, G.N., Subirana, J.A.
Deposit date:2004-09-03
Release date:2005-07-19
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Variable role of ions in two drug intercalation complexes of DNA
J.Biol.Inorg.Chem., 10, 2005
1XCU
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OLIGONUCLEOTID/DRUG COMPLEX
Descriptor:5'-D(*CP*GP*TP*AP*CP*G)-3', COBALT (II) ION, 1,5-BIS[3-(DIETHYLAMINO)PROPIONAMIDO]ANTHRACENE-9,10-DIONE, ...
Authors:Valls, N., Steiner, R.A., Wright, G., Murshudov, G.N., Subirana, J.A.
Deposit date:2004-09-03
Release date:2005-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Variable role of ions in two drug intercalation complexes of DNA
J.Biol.Inorg.Chem., 10, 2005
2A2T
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CRYSTAL STRUCTURE OF D(AAATATTT)
Descriptor:5'-D(*AP*AP*AP*TP*AP*TP*TP*T)-3', MANGANESE (II) ION, CACODYLATE ION
Authors:Valls, N., Richter, M., Subirana, J.A.
Deposit date:2005-06-23
Release date:2005-11-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of a DNA duplex with all-AT base pairs.
Acta Crystallogr.,Sect.D, 61, 2005
2AF1
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STRUCTURE OF THE DNA COILED-COIL FORMED BY D(CGATATATATAT)
Descriptor:5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*AP*TP*AP*T)-3'
Authors:De Luchi, D., Tereshko, V., Gouyette, C., Subirana, J.A.
Deposit date:2005-07-25
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the DNA Coiled Coil Formed by d(CGATATATATAT)
Chembiochem, 7, 2006
2D47
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MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA
Descriptor:DNA (5'-D(*CP*CP*CP*CP*CP*GP*CP*GP*GP*GP*GP*G)-3'), SPERMINE
Authors:Verdaguer, N., Aymami, J., Fernandez-Forner, D., Fita, I., Coll, M., Huynh-Dinh, T., Igolen, J., Subirana, J.A.
Deposit date:1991-10-02
Release date:1991-10-02
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular structure of a complete turn of A-DNA.
J.Mol.Biol., 221, 1991
2G1Z
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X-RAY STRUCTURE OF THE OLIGONUCLEOTIDE SEQUENCE D(AAATTT)
Descriptor:5'-D(*AP*AP*AP*TP*TP*T)-3'
Authors:Valls, N., Santaolalla, A., Campos, J.L., Subirana, J.A.
Deposit date:2006-02-15
Release date:2006-03-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Packing features of the all-AT oligonucleotide d(AAATTT).
J.Biomol.Struct.Dyn., 24, 2007
2QS6
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STRUCTURE OF A HOOGSTEEN ANTIPARALLEL DUPLEX WITH EXTRA-HELICAL THYMINES
Descriptor:DNA (5'-D(*DAP*DTP*DAP*DTP*DAP*DTP*DCP*DT)-3')
Authors:Pous, J., Urpi, L., Subirana, J.A., Gouyette, C., Navaza, J., Campos, J.L.
Deposit date:2007-07-30
Release date:2008-03-25
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Stabilization by extra-helical thymines of a DNA duplex with Hoogsteen base pairs.
J.Am.Chem.Soc., 130, 2008
368D
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STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Descriptor:DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3')
Authors:Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L., Malinina, L.
Deposit date:1997-12-19
Release date:1998-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural variability of A-DNA in crystals of the octamer d(pCpCpCpGpCpGpGpG)
J.Biomol.Struct.Dyn., 15, 1997
369D
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STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Descriptor:DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3')
Authors:Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L.
Deposit date:1997-12-19
Release date:1998-07-15
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural variability of A-DNA in crystals of the octamer d(pCpCpCpGpCpGpGpG)
J.Biomol.Struct.Dyn., 15, 1997
370D
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STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Descriptor:DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3'), MAGNESIUM ION
Authors:Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L.
Deposit date:1997-12-19
Release date:1998-07-15
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural variability of A-DNA in crystals of the octamer d(pCpCpCpGpCpGpGpG)
J.Biomol.Struct.Dyn., 15, 1997
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