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Archaeoglobus fulgidus thioredoxin 3 M60H
Descriptor:	Thioredoxin (Trx-3)
Authors:	Dey, M, Bjork, R.E, Drennan, C.L.
Deposit date:	2015-01-05
Release date:	2015-04-29
Last modified:	2019-11-20
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	Rheostat Re-Wired: Alternative Hypotheses for the Control of Thioredoxin Reduction Potentials. Plos One, 10

2RIO

Structure of the dual enzyme Ire1 reveals the basis for catalysis and regulation of non-conventional splicing
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, STRONTIUM ION, ...
Authors:	Lee, K.P, Dey, M, Neculai, D, Cao, C, Dever, T.E, Sicheri, F.
Deposit date:	2007-10-12
Release date:	2008-01-29
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Structure of the dual enzyme ire1 reveals the basis for catalysis and regulation in nonconventional RNA splicing. Cell(Cambridge,Mass.), 132, 2008

5HV4

Crystal Structure of a Prolyl 4-Hydroxylase Complexed with Alpha-ketoglutarate from the Pathogenic Bacterium Bacillus anthracis in C2221
Descriptor:	2-OXOGLUTARIC ACID, 2OG-Fe(II) oxygenase, CADMIUM ION, ...
Authors:	Schnicker, N.J, Dey, M.
Deposit date:	2016-01-28
Release date:	2016-05-04
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	Structural analysis of cofactor binding for a prolyl 4-hydroxylase from the pathogenic bacterium Bacillus anthracis. Acta Crystallogr D Struct Biol, 72, 2016

5IAX

Mechanistic and Structural Analysis of Substrate Recognition and Cofactor Binding by an Unusual Bacterial Prolyl Hydroxylase - Co-BaP4H-PPG
Descriptor:	2-OXOGLUTARIC ACID, BETA-MERCAPTOETHANOL, COBALT (II) ION, ...
Authors:	Schnicker, N.J, Dey, M.
Deposit date:	2016-02-22
Release date:	2016-04-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Bacillus anthracis Prolyl 4-Hydroxylase Modifies Collagen-like Substrates in Asymmetric Patterns. J.Biol.Chem., 291, 2016

3M2V

Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues
Descriptor:	1,2-ETHANEDIOL, 1-THIOETHANESULFONIC ACID, ACETATE ION, ...
Authors:	Cedervall, P.E, Dey, M, Ragsdale, S.W, Wilmot, C.M.
Deposit date:	2010-03-08
Release date:	2010-09-15
Last modified:	2017-11-08
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structural insight into methyl-coenzyme M reductase chemistry using coenzyme B analogues. Biochemistry, 49, 2010

6WP3

Pyruvate Kinase M2 Mutant-K433Q
Descriptor:	CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:	Nandi, S, Razzaghi, M, Srivastava, D, Dey, M.
Deposit date:	2020-04-26
Release date:	2020-10-07
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (1.84 Å)
Cite:	Structural basis for allosteric regulation of pyruvate kinase M2 by phosphorylation and acetylation. J.Biol.Chem., 295, 2020

6WP5

Pyruvate Kinase M2 mutant-S37D
Descriptor:	1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, MAGNESIUM ION, ...
Authors:	Nandi, S, Razzaghi, M, Srivastava, D, Dey, M.
Deposit date:	2020-04-26
Release date:	2020-09-30
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.17 Å)
Cite:	Structural basis for allosteric regulation of pyruvate kinase M2 by phosphorylation and acetylation. J.Biol.Chem., 295, 2020

6WP6

Pyruvate Kinase M2 mutant-S37E K433E
Descriptor:	GLYCEROL, MAGNESIUM ION, NITRATE ION, ...
Authors:	Nandi, S, Razzaghi, M, Srivastava, D, Dey, M.
Deposit date:	2020-04-26
Release date:	2020-10-07
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.45 Å)
Cite:	Structural basis for allosteric regulation of pyruvate kinase M2 by phosphorylation and acetylation. J.Biol.Chem., 295, 2020

6WP4

Pyruvate Kinase M2 mutant-S37E
Descriptor:	CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:	Nandi, S, Razzaghi, M, Srivastava, D, Dey, M.
Deposit date:	2020-04-26
Release date:	2020-09-30
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Structural basis for allosteric regulation of pyruvate kinase M2 by phosphorylation and acetylation. J.Biol.Chem., 295, 2020

6NUB

Pyruvate Kinase M2 Mutant - S437Y in Complex with L-serine
Descriptor:	1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:	Srivastava, D, Nandi, S, Dey, M.
Deposit date:	2019-01-31
Release date:	2019-08-21
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Mechanistic and Structural Insights into Cysteine-Mediated Inhibition of Pyruvate Kinase Muscle Isoform 2. Biochemistry, 58, 2019

6NU1

Crystal Structure of Human PKM2 in Complex with L-cysteine
Descriptor:	1,6-di-O-phosphono-beta-D-fructofuranose, CYSTEINE, MAGNESIUM ION, ...
Authors:	Srivastava, D, Nandi, S, Dey, M.
Deposit date:	2019-01-30
Release date:	2019-08-21
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	Mechanistic and Structural Insights into Cysteine-Mediated Inhibition of Pyruvate Kinase Muscle Isoform 2. Biochemistry, 58, 2019

6NU5

Pyruvate Kinase M2 Mutant - S437Y in Complex with L-cysteine
Descriptor:	1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CYSTEINE, ...
Authors:	Srivastava, D, Nandi, S, Dey, M.
Deposit date:	2019-01-30
Release date:	2019-08-21
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Mechanistic and Structural Insights into Cysteine-Mediated Inhibition of Pyruvate Kinase Muscle Isoform 2. Biochemistry, 58, 2019

6B6U

Pyruvate Kinase M2 mutant - S437Y
Descriptor:	1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:	Srivastava, D, Dey, M.
Deposit date:	2017-10-03
Release date:	2017-12-20
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (1.35 Å)
Cite:	Structural Investigation of a Dimeric Variant of Pyruvate Kinase Muscle Isoform 2. Biochemistry, 56, 2017

5V7Y

Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu
Descriptor:	(4S)-2-METHYL-2,4-PENTANEDIOL, 2-OXOGLUTARIC ACID, 2OG-Fe(II) oxygenase, ...
Authors:	Schnicker, N.J, Dey, M.
Deposit date:	2017-03-21
Release date:	2017-10-18
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (2.05 Å)
Cite:	Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu. Biochemistry, 56, 2017

6V74

Crystal Structure of Human PKM2 in Complex with L-asparagine
Descriptor:	1,6-di-O-phosphono-beta-D-fructofuranose, ASPARAGINE, CHLORIDE ION, ...
Authors:	Nandi, S, Dey, M.
Deposit date:	2019-12-07
Release date:	2020-03-18
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.32 Å)
Cite:	Biochemical and structural insights into how amino acids regulate pyruvate kinase muscle isoform 2. J.Biol.Chem., 295, 2020

6V76

Crystal Structure of Human PKM2 in Complex with L-valine
Descriptor:	1,6-di-O-phosphono-beta-D-fructofuranose, CHLORIDE ION, GLYCEROL, ...
Authors:	Nandi, S, Dey, M.
Deposit date:	2019-12-07
Release date:	2020-03-18
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.75 Å)
Cite:	Biochemical and structural insights into how amino acids regulate pyruvate kinase muscle isoform 2. J.Biol.Chem., 295, 2020

6V75

Crystal Structure of Human PKM2 in Complex with L-aspartate
Descriptor:	1,6-di-O-phosphono-beta-D-fructofuranose, ASPARTIC ACID, CHLORIDE ION, ...
Authors:	Nandi, S, Dey, M.
Deposit date:	2019-12-07
Release date:	2020-03-18
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.85 Å)
Cite:	Biochemical and structural insights into how amino acids regulate pyruvate kinase muscle isoform 2. J.Biol.Chem., 295, 2020

7L21

Pyruvate Kinase M2 mutant-N70D
Descriptor:	1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, MAGNESIUM ION, ...
Authors:	Nandi, S, Dey, M.
Deposit date:	2020-12-16
Release date:	2021-12-22
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.29 Å)
Cite:	Identification of residues involved in allosteric signal transmission from amino acid binding site of pyruvate kinase muscle isoform 2. Plos One, 18, 2023

5HV0

Structural Analysis of Cofactor Binding of a Prolyl 4-Hydroxylase from the Pathogenic Bacterium Bacillus anthracis
Descriptor:	2-OXOGLUTARIC ACID, CADMIUM ION, GLYCEROL, ...
Authors:	Schnicker, N.J, Dey, M.
Deposit date:	2016-01-28
Release date:	2016-05-04
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.63 Å)
Cite:	Structural analysis of cofactor binding for a prolyl 4-hydroxylase from the pathogenic bacterium Bacillus anthracis. Acta Crystallogr D Struct Biol, 72, 2016

5TG0

Crystal structure of the dimethylsulfoniopropionate (DMSP) lyase DddK complexed with iron and zinc
Descriptor:	FE (III) ION, ZINC ION, dimethylsulfoniopropionate lyase DddK
Authors:	Schnicker, N.J, Dey, M.
Deposit date:	2016-09-27
Release date:	2017-06-14
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (1.44 Å)
Cite:	Structural and Biochemical Insights into Dimethylsulfoniopropionate Cleavage by Cofactor-Bound DddK from the Prolific Marine Bacterium Pelagibacter. Biochemistry, 56, 2017

5TFZ

Crystal structure of the dimethylsulfoniopropionate (DMSP) lyase DddK complexed with nickel and diacrylate
Descriptor:	3-(acryloyloxy)propanoic acid, DI(HYDROXYETHYL)ETHER, NICKEL (II) ION, ...
Authors:	Schnicker, N.J, Dey, M.
Deposit date:	2016-09-27
Release date:	2017-06-14
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Structural and Biochemical Insights into Dimethylsulfoniopropionate Cleavage by Cofactor-Bound DddK from the Prolific Marine Bacterium Pelagibacter. Biochemistry, 56, 2017

5IAT

Mechanistic and Structural Analysis of Substrate Recognition and Cofactor Binding by an Unusual Bacterial Prolyl Hydroxylase - apo-BaP4H
Descriptor:	DI(HYDROXYETHYL)ETHER, GLYCEROL, Procollagen-Proline Dioxygenase
Authors:	Schnicker, N.J, Dey, M.
Deposit date:	2016-02-21
Release date:	2016-04-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.67 Å)
Cite:	Bacillus anthracis Prolyl 4-Hydroxylase Modifies Collagen-like Substrates in Asymmetric Patterns. J.Biol.Chem., 291, 2016

5IAV

Mechanistic and Structural Analysis of Substrate Recognition and Cofactor Binding by an Unusual Bacterial Prolyl Hydroxylase - Co-BaP4H-MLI
Descriptor:	COBALT (II) ION, MALONATE ION, Procollagen-Proline Dioxygenase
Authors:	Schnicker, N.J, Dey, M.
Deposit date:	2016-02-21
Release date:	2016-04-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Bacillus anthracis Prolyl 4-Hydroxylase Modifies Collagen-like Substrates in Asymmetric Patterns. J.Biol.Chem., 291, 2016

5JSP

New Mechanistic Insight from Substrate and Product Bound Structures of the Metal-dependent Dimethylsulfoniopropionate Lyase DddQ
Descriptor:	3-(dimethyl-lambda~4~-sulfanyl)propanoic acid, BROMIDE ION, CHLORIDE ION, ...
Authors:	Brummett, A.E, Dey, M.
Deposit date:	2016-05-09
Release date:	2017-02-22
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	New Mechanistic Insight from Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ. Biochemistry, 55, 2016

5JSR

New Mechanistic Insight from Substrate and Product Bound Structures of the Metal-dependent Dimethylsulfoniopropionate Lyase DddQ
Descriptor:	ACRYLIC ACID, BROMIDE ION, CHLORIDE ION, ...
Authors:	Brummett, A.E, Dey, M.
Deposit date:	2016-05-09
Release date:	2017-02-22
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	New Mechanistic Insight from Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ. Biochemistry, 55, 2016

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