Author results

5WS5
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (PREFLASH DARK DATASET)
Descriptor:Photosystem II D1 protein, Photosystem II CP47 reaction center protein, Photosystem II CP43 protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-12-05
Release date:2017-03-15
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5WS6
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (PREFLASH TWO-FLASH DATASET
Descriptor:Photosystem II D1 protein, Photosystem II CP47 reaction center protein, Photosystem II CP43 chlorophyll protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-12-05
Release date:2017-03-15
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
6KKA
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XYLANASE J MUTANT FROM BACILLUS SP. 41M-1
Descriptor:Endo-1,4-beta-xylanase, CALCIUM ION, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Suzuki, M., Takita, T., Nakatani, K.
Deposit date:2019-07-24
Release date:2019-09-04
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Increase in the thermostability of GH11 xylanase XynJ from Bacillus sp. strain 41M-1 using site saturation mutagenesis.
Enzyme.Microb.Technol., 130, 2019
2ZNZ
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CRYSTAL STRUCTURE OF FFRP
Descriptor:Uncharacterized HTH-type transcriptional regulator PH1519, LYSINE
Authors:Yamada, M., Suzuki, M.
Deposit date:2008-05-02
Release date:2009-03-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Interactions between the archaeal transcription repressor FL11 and its coregulators lysine and arginine.
Proteins, 74, 2009
3AWG
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CRYSTAL STRUCTURE OF PTEN-LIKE DOMAIN OF CI-VSP G356A MUTANT (248-576)
Descriptor:Voltage-sensor containing phosphatase, SULFATE ION
Authors:Matsuda, M., Sakata, S., Takeshita, K., Suzuki, M., Yamashita, E., Okamura, Y., Nakagawa, A.
Deposit date:2011-03-19
Release date:2011-05-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Crystal structure of the cytoplasmic phosphatase and tensin homolog (PTEN)-like region of Ciona intestinalis voltage-sensing phosphatase provides insight into substrate specificity and redox regulation of the phosphoinositide phosphatase activity
J.Biol.Chem., 286, 2011
3VRQ
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CRYSTAL STRUCTURE OF THE TYROSINE KINASE BINDING DOMAIN OF CBL-C (PL MUTANT)
Descriptor:Signal transduction protein CBL-C, CALCIUM ION
Authors:Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
1WZW
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CRYSTAL STRUCTURE OF UBCH8
Descriptor:Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of UbcH8
To be Published
2EBS
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CRYSTAL STRUCTURE ANAALYSIS OF OLIGOXYLOGLUCAN REDUCING-END-SPECIFIC CELLOBIOHYDROLASE (OXG-RCBH) D465N MUTANT COMPLEXED WITH A XYLOGLUCAN HEPTASACCHARIDE
Descriptor:Oligoxyloglucan reducing end-specific cellobiohydrolase, BETA-D-GLUCOSE, XYLOPYRANOSE
Authors:Yaoi, K., Kondo, H., Hiyoshi, A., Noro, N., Sugimoto, H., Miyazaki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-09
Release date:2007-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Structural Basis for the Exo-mode of Action in GH74 Oligoxyloglucan Reducing End-specific Cellobiohydrolase.
J.Mol.Biol., 370, 2007
3APO
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CRYSTAL STRUCTURE OF FULL-LENGTH ERDJ5
Descriptor:DnaJ homolog subfamily C member 10
Authors:Inaba, K., Suzuki, M., Nagata, K.
Deposit date:2010-10-20
Release date:2011-04-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of an ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5.
Mol.Cell, 41, 2011
3WUN
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CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Nango, E., Suzuki, M.
Deposit date:2014-04-28
Release date:2015-05-27
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of hen egg-white lysozyme
To be Published
6KJL
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XYLANASE J FROM BACILLUS SP. STRAIN 41M-1
Descriptor:Endo-1,4-beta-xylanase, CALCIUM ION, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Manami, S., Teisuke, T., Nakatani, K., Katano, K., Kojima, K., Saka, N., Mikami, B., Yatsunami, R., Nakamura, S., Yasukawa, K.
Deposit date:2019-07-22
Release date:2019-09-04
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Increase in the thermostability of GH11 xylanase XynJ from Bacillus sp. strain 41M-1 using site saturation mutagenesis.
Enzyme.Microb.Technol., 130, 2019
1UIZ
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CRYSTAL STRUCTURE OF MACROPHAGE MIGRATION INHIBITORY FACTOR FROM XENOPUS LAEVIS.
Descriptor:Macrophage Migration Inhibitory Factor
Authors:Suzuki, M., Takamura, Y., Maeno, M., Tochinai, S., Iyaguchi, D., Tanaka, I., Nishihira, J., Ishibashi, T.
Deposit date:2003-07-24
Release date:2004-05-25
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Xenopus laevis Macrophage Migration Inhibitory Factor Is Essential for Axis Formation and Neural Development.
J.Biol.Chem., 279, 2004
2E1A
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CRYSTAL STRUCTURE OF FFRP-DM1
Descriptor:75aa long hypothetical regulatory protein AsnC, SELENOMETHIONINE
Authors:Koike, H., Suzuki, M.
Deposit date:2006-10-19
Release date:2007-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Structural Code for Discriminating between Transcription Signals Revealed by the Feast/Famine Regulatory Protein DM1 in Complex with Ligands
Structure, 15, 2007
2Z5R
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APO-FR WITH HIGH CONTENT OF PD IONS
Descriptor:Ferritin light chain, PALLADIUM ION, CADMIUM ION
Authors:Ueno, T., Hirata, K., Abe, M., Suzuki, M., Abe, S., Shimizu, N., Yamamoto, M., Takata, M., Watanabe, Y.
Deposit date:2007-07-16
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions.
J.Am.Chem.Soc., 131, 2009
3WD6
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CRYSTAL STRUCTURE OF BOMBYX MORI OMEGA-CLASS GLUTATHIONE TRANSFERASE IN COMPLEX WITH GSH
Descriptor:Omega-class glutathione S-transferase, POTASSIUM ION, 1,2-ETHANEDIOL, ...
Authors:Yamamoto, K., Suzuki, M., Higashiura, A., Nakagawa, A.
Deposit date:2013-06-07
Release date:2014-07-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-dimensional structure of a Bombyx mori Omega-class glutathione transferase.
Biochem.Biophys.Res.Commun., 438, 2013
3WGD
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CRYSTAL STRUCTURE OF ERP46 TRX1
Descriptor:Thioredoxin domain-containing protein 5, PHOSPHATE ION, GLYCEROL, ...
Authors:Inaba, K., Suzuki, M., Kojima, R.
Deposit date:2013-08-04
Release date:2014-06-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family
Structure, 22, 2014
5GTH
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (DARK DATASET)
Descriptor:Photosystem II protein D1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-08-20
Release date:2017-03-15
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5GTI
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (TWO FLASH DATASET)
Descriptor:Photosystem II D1 protein, Photosystem II CP47 reaction center protein, Photosystem II CP43 protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-08-20
Release date:2017-03-15
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
6JID
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HUMAN MTHFD2 IN COMPLEX WITH COMPOUND 1
Descriptor:Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial, 5-(4-oxo-2-phenyl-1,5,7,8-tetrahydropyrido[4,3-d]pyrimidine-6(4H)-carbonyl)-1,3-dihydro-2H-2lambda~6~,1-benzothiazole-2,2-dione, ...
Authors:Suzuki, M., Matsui, Y., Matsuhashi, N., Kawai, J.
Deposit date:2019-02-20
Release date:2019-06-05
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Based Design and Synthesis of an Isozyme-Selective MTHFD2 Inhibitor with a Tricyclic Coumarin Scaffold.
Acs Med.Chem.Lett., 10, 2019
4REM
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CRYSTAL STRUCTURE OF UDP-GLUCOSE: ANTHOCYANIDIN 3-O-GLUCOSYLTRANSFERASE IN COMPLEX WITH DELPHINIDIN
Descriptor:UDP-glucose:anthocyanidin 3-O-glucosyltransferase, 3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)chromenium, GLYCEROL
Authors:Hiromoto, T., Honjo, E., Tamada, T., Kuroki, R.
Deposit date:2014-09-23
Release date:2015-01-21
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis for acceptor-substrate recognition of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea
Protein Sci., 24, 2015
5B22
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DIMER STRUCTURE OF MURINE NECTIN-3 D1D2
Descriptor:Nectin-3, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE
Authors:Takebe, K., Sangawa, T., Katsutani, T., Narita, H., Suzuki, M.
Deposit date:2015-12-28
Release date:2016-12-28
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Dimer structure of murine Nectin-3 D1D2
To Be Published
2ZNY
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CRYSTAL STRUCTURE OF THE FFRP
Descriptor:Uncharacterized HTH-type transcriptional regulator PH1519, ARGININE
Authors:Yamada, M., Suzuki, M.
Deposit date:2008-05-02
Release date:2009-03-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Interactions between the archaeal transcription repressor FL11 and its coregulators lysine and arginine.
Proteins, 74, 2009
1WR6
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CRYSTAL STRUCTURE OF GGA3 GAT DOMAIN IN COMPLEX WITH UBIQUITIN
Descriptor:ADP-ribosylation factor binding protein GGA3, ubiquitin
Authors:Kawasaki, M., Shiba, T., Shiba, Y., Yamaguchi, Y., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Kato, K., Nakayama, K., Wakatsuki, S.
Deposit date:2004-10-12
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular mechanism of ubiquitin recognition by GGA3 GAT domain.
Genes Cells, 10, 2005
4PYV
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CRYSTAL STRUCTURE OF RENIN IN COMPLEX WITH COMPOUND4
Descriptor:Renin, N-ACETYL-D-GLUCOSAMINE, tert-butyl {(3S,5R)-5-[cyclopropyl(2,3-dichlorobenzyl)carbamoyl]piperidin-3-yl}carbamate, ...
Authors:Ostermann, N., Zink, F.
Deposit date:2014-03-28
Release date:2014-10-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure-based design of substituted piperidines as a new class of highly efficacious oral direct Renin inhibitors.
ACS Med Chem Lett, 5, 2014
1RI7
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CRYSTAL STRUCTURE OF A PROTEIN IN THE LRP/ASNC FAMILY FROM THE HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS SP. OT3
Descriptor:Putative transcriptional regulator
Authors:Koike, H., Suzuki, M.
Deposit date:2003-11-16
Release date:2004-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The archaeal feast/famine regulatory protein: Potential roles of its assembly forms for regulating transcription
Proc.Natl.Acad.Sci.USA, 101, 2004