Author results

3VK9
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CRYSTAL STRUCTURE OF DELTA-CLASS GLUTATHIONE TRANSFERASE FROM SILKMOTH
Descriptor:Glutathione S-transferase delta, GLYCEROL
Authors:Kakuta, Y., Usuda, K., Higashiura, A., Suzuki, M., Nakagawa, A., Kimura, M., Yamamoto, K.
Deposit date:2011-11-10
Release date:2012-10-03
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase
Biochim.Biophys.Acta, 1820, 2012
3VQF
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CRYSTAL STRUCTURE ANALYSIS OF THE PDZ DOMAIN DERIVED FROM THE TIGHT JUNCTION REGULATING PROTEIN
Descriptor:E3 ubiquitin-protein ligase LNX
Authors:Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.
Deposit date:2012-03-22
Release date:2013-03-27
Method:X-RAY DIFFRACTION (1.199 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
3VQG
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CRYSTAL STRUCTURE ANALYSIS OF THE PDZ DOMAIN DERIVED FROM THE TIGHT JUNCTION REGULATING PROTEIN
Descriptor:E3 ubiquitin-protein ligase LNX, C-terminal peptide from Immunoglobulin superfamily member 5, SULFATE ION
Authors:Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.
Deposit date:2012-03-23
Release date:2013-03-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
3VRN
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CRYSTAL STRUCTURE OF THE TYROSINE KINASE BINDING DOMAIN OF CBL-C
Descriptor:Signal transduction protein CBL-C, CALCIUM ION
Authors:Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c
J.Biochem., 152, 2012
3VRO
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CRYSTAL STRUCTURE OF THE TYROSINE KINASE BINDING DOMAIN OF CBL-C IN COMPLEX WITH PHOSPHO-SRC PEPTIDE
Descriptor:Signal transduction protein CBL-C, Proto-oncogene tyrosine-protein kinase Src, CALCIUM ION
Authors:Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3VRP
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CRYSTAL STRUCTURE OF THE TYROSINE KINASE BINDING DOMAIN OF CBL-C IN COMPLEX WITH PHOSPHO-EGFR PEPTIDE
Descriptor:Signal transduction protein CBL-C, Epidermal growth factor receptor, CALCIUM ION
Authors:Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3VRQ
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CRYSTAL STRUCTURE OF THE TYROSINE KINASE BINDING DOMAIN OF CBL-C (PL MUTANT)
Descriptor:Signal transduction protein CBL-C, CALCIUM ION
Authors:Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3VRR
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CRYSTAL STRUCTURE OF THE TYROSINE KINASE BINDING DOMAIN OF CBL-C (PL MUTANT) IN COMPLEX WITH PHOSPHO-EGFR PEPTIDE
Descriptor:Signal transduction protein CBL-C, Epidermal growth factor receptor, CALCIUM ION
Authors:Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3WUN
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CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Nango, E., Suzuki, M.
Deposit date:2014-04-28
Release date:2015-05-27
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of hen egg-white lysozyme
To be Published
4YM8
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CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Nakane, T., Suzuki, M., Nango, E.
Deposit date:2015-03-06
Release date:2015-12-23
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of hen egg-white lysozyme
To Be Published
5B1D
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CRYSTAL STRUCTURE OF PROTEINASE K FROM ENGYODONTIUM ALBUM
Descriptor:Proteinase K, CALCIUM ION
Authors:Sugahara, M., Suzuki, M., Numata, K.
Deposit date:2015-12-03
Release date:2016-12-14
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of proteinase K from Engyodontium album
To Be Published
5B1E
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CRYSTAL STRUCTURE OF PROTEINASE K FROM ENGYODONTIUM ALBUM
Descriptor:Proteinase K, CALCIUM ION
Authors:Sugahara, M., Suzuki, M., Numata, K.
Deposit date:2015-12-03
Release date:2016-12-14
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of proteinase K from Engyodontium album
To Be Published
5B1F
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CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Nango, E.
Deposit date:2015-12-03
Release date:2016-12-07
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of hen egg-white lysozyme
To Be Published
5B1G
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CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Nango, E.
Deposit date:2015-12-03
Release date:2016-12-07
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of hen egg-white lysozyme
To Be Published
5X9L
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RECOMBINANT THAUMATIN I AT 0.9 ANGSTROM
Descriptor:Thaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Okubo, K., Sugahara, M., Suzuki, M., Mikami, B.
Deposit date:2017-03-08
Release date:2018-03-14
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:Subatomic structure of hyper-sweet thaumatin D21N mutant reveals the importance of flexible conformations for enhanced sweetness.
Biochimie, 157, 2019
5X9M
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STRUCTURE OF HYPER-SWEET THAUMATIN (D21N)
Descriptor:Thaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Okubo, K., Sugahara, M., Suzuki, M., Mikami, B.
Deposit date:2017-03-08
Release date:2018-03-14
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Subatomic structure of hyper-sweet thaumatin D21N mutant reveals the importance of flexible conformations for enhanced sweetness.
Biochimie, 157, 2019
5Y1A
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HBP35 OF PORPHYROMONAS GINGIVALIS
Descriptor:35 kDa hemin binding protein
Authors:Kakuda, S., Suzuki, M., Sato, K.
Deposit date:2017-07-20
Release date:2018-07-25
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system.
Mol. Microbiol., 110, 2018
5YYP
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STRUCTURE K137A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Mitsumoto, M., Ohta, K., Suzuki, M., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
5YYQ
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STRUCTURE K78A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Mitsumoto, M., Ohta, K., Suzuki, M., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
5YYR
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STRUCTURE K106A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Ohta, K., Mitsumoto, M., Mikami, B., Suzuki, M., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
6AD9
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DIBENZOOXEPINE DERIVATIVE COMPOUND-9
Descriptor:Peroxisome proliferator-activated receptor gamma, 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one
Authors:Takahashi, Y., Suzuki, M., Yamamoto, K., Saito, J.
Deposit date:2018-07-31
Release date:2018-11-14
Last modified:2018-12-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers.
J. Med. Chem., 61, 2018
1HI2
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EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - SULPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, SULFATE ION
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI3
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EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSINE 2'-5'-DIPHOSPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, ADENOSINE-2'-5'-DIPHOSPHATE
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI4
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EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSIEN-3'-5'-DIPHOSPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI5
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EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSINE-5'-DIPHOSPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, ADENOSINE-5'-DIPHOSPHATE
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001