Author results

4YM8
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CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Nakane, T., Suzuki, M., Nango, E.
Deposit date:2015-03-06
Release date:2015-12-23
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of hen egg-white lysozyme
To Be Published
5B1D
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CRYSTAL STRUCTURE OF PROTEINASE K FROM ENGYODONTIUM ALBUM
Descriptor:Proteinase K, CALCIUM ION
Authors:Sugahara, M., Suzuki, M., Numata, K.
Deposit date:2015-12-03
Release date:2016-12-14
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of proteinase K from Engyodontium album
To Be Published
5B1E
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CRYSTAL STRUCTURE OF PROTEINASE K FROM ENGYODONTIUM ALBUM
Descriptor:Proteinase K, CALCIUM ION
Authors:Sugahara, M., Suzuki, M., Numata, K.
Deposit date:2015-12-03
Release date:2016-12-14
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of proteinase K from Engyodontium album
To Be Published
5B1F
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CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Nango, E.
Deposit date:2015-12-03
Release date:2016-12-07
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of hen egg-white lysozyme
To Be Published
5B1G
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CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Nango, E.
Deposit date:2015-12-03
Release date:2016-12-07
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of hen egg-white lysozyme
To Be Published
5X9L
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RECOMBINANT THAUMATIN I AT 0.9 ANGSTROM
Descriptor:Thaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Okubo, K., Sugahara, M., Suzuki, M., Mikami, B.
Deposit date:2017-03-08
Release date:2018-03-14
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:Subatomic structure of hyper-sweet thaumatin D21N mutant reveals the importance of flexible conformations for enhanced sweetness.
Biochimie, 157, 2019
5X9M
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STRUCTURE OF HYPER-SWEET THAUMATIN (D21N)
Descriptor:Thaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Okubo, K., Sugahara, M., Suzuki, M., Mikami, B.
Deposit date:2017-03-08
Release date:2018-03-14
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Subatomic structure of hyper-sweet thaumatin D21N mutant reveals the importance of flexible conformations for enhanced sweetness.
Biochimie, 157, 2019
5Y1A
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HBP35 OF PORPHYROMONAS GINGIVALIS
Descriptor:35 kDa hemin binding protein
Authors:Kakuda, S., Suzuki, M., Sato, K.
Deposit date:2017-07-20
Release date:2018-07-25
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system.
Mol. Microbiol., 110, 2018
5YYP
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STRUCTURE K137A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Mitsumoto, M., Ohta, K., Suzuki, M., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
5YYQ
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STRUCTURE K78A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Mitsumoto, M., Ohta, K., Suzuki, M., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
5YYR
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STRUCTURE K106A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Ohta, K., Mitsumoto, M., Mikami, B., Suzuki, M., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
6AD9
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DIBENZOOXEPINE DERIVATIVE COMPOUND-9
Descriptor:Peroxisome proliferator-activated receptor gamma, 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one
Authors:Takahashi, Y., Suzuki, M., Yamamoto, K., Saito, J.
Deposit date:2018-07-31
Release date:2018-11-14
Last modified:2018-12-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers.
J. Med. Chem., 61, 2018
1HI2
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EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - SULPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, SULFATE ION
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI3
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EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSINE 2'-5'-DIPHOSPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, ADENOSINE-2'-5'-DIPHOSPHATE
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI4
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EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSIEN-3'-5'-DIPHOSPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI5
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EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSINE-5'-DIPHOSPHATE COMPLEX
Descriptor:EOSINOPHIL-DERIVED NEUROTOXIN, ADENOSINE-5'-DIPHOSPHATE
Authors:Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1ISP
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS LIPASE AT 1.3A RESOLUTION
Descriptor:lipase, GLYCEROL
Authors:Kawasaki, K., Kondo, H., Suzuki, M., Ohgiya, S., Tsuda, S.
Deposit date:2001-12-19
Release date:2002-12-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
1MP9
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TBP FROM A MESOTHERMOPHILIC ARCHAEON, SULFOLOBUS ACIDOCALDARIUS
Descriptor:TATA-binding protein
Authors:Koike, H., Kawashima-Ohya, Y., Yamasaki, T., Clowney, L., Katsuya, Y., Suzuki, M.
Deposit date:2002-09-12
Release date:2003-11-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Origins of Protein Stability Revealed by Comparing Crystal Structures of TATA Binding Proteins.
Structure, 12, 2004
1RI7
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CRYSTAL STRUCTURE OF A PROTEIN IN THE LRP/ASNC FAMILY FROM THE HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS SP. OT3
Descriptor:Putative transcriptional regulator
Authors:Koike, H., Suzuki, M.
Deposit date:2003-11-16
Release date:2004-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The archaeal feast/famine regulatory protein: Potential roles of its assembly forms for regulating transcription
Proc.Natl.Acad.Sci.USA, 101, 2004
1WZV
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CRYSTAL STRUCTURE OF UBCH8
Descriptor:Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of UbcH8
To be Published
1WZW
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CRYSTAL STRUCTURE OF UBCH8
Descriptor:Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of UbcH8
To be Published
2D05
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CHITOSANASE FROM BACILLUS CIRCULANS MUTANT K218P
Descriptor:Chitosanase, SULFATE ION
Authors:Fukamizo, T., Amano, S., Yamaguchi, K., Yoshikawa, T., Katsumi, T., Saito, J., Suzuki, M., Miki, K., Nagata, Y., Ando, A.
Deposit date:2005-07-25
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Bacillus circulans MH-K1 Chitosanase: Amino Acid Residues Responsible for Substrate Binding
J.Biochem.(Tokyo), 138, 2005
2E0Z
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CRYSTAL STRUCTURE OF VIRUS-LIKE PARTICLE FROM PYROCOCCUS FURIOSUS
Descriptor:Virus-like particle
Authors:Akita, F., Chong, K.T., Tanaka, H., Yamashita, E., Miyazaki, N., Nakaishi, Y., Namba, K., Ono, Y., Suzuki, M., Tsukihara, T., Nakagawa, A.
Deposit date:2006-10-16
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Crystal Structure of a Virus-like Particle from the Hyperthermophilic Archaeon Pyrococcus furiosus Provides Insight into the Evolution of Viruses
J.Mol.Biol., 368, 2007
2HI7
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CRYSTAL STRUCTURE OF DSBA-DSBB-UBIQUINONE COMPLEX
Descriptor:Thiol:disulfide interchange protein dsbA, Disulfide bond formation protein B, ZINC ION, ...
Authors:Inaba, K., Murakami, S., Suzuki, M., Nakagawa, A., Yamashita, E., Okada, K., Ito, K.
Deposit date:2006-06-29
Release date:2006-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal Structure of the DsbB-DsbA Complex Reveals a Mechanism of Disulfide Bond Generation
Cell(Cambridge,Mass.), 127, 2006
2K7W
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BAX ACTIVATION IS INITIATED AT A NOVEL INTERACTION SITE
Descriptor:Apoptosis regulator BAX, Bcl-2-like protein 11
Authors:Gavathiotis, E., Suzuki, M., Davis, M.L., Pitter, K., Bird, G.H., Katz, S.G., Tu, H.C., Kim, H., Cheng, E.H., Tjandra, N., Walensky, L.D.
Deposit date:2008-08-27
Release date:2008-10-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:BAX activation is initiated at a novel interaction site.
Nature, 455, 2008