Author results

5I4F
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SCFV 2D10 COMPLEXED WITH ALPHA 1,6 MANNOBIOSE
Descriptor:scFv 2D10, 6-O-alpha-D-mannopyranosyl-alpha-D-mannopyranose
Authors:Vashisht, S., Kumar, A., Kaur, K.J., Salunke, D.M.
Deposit date:2016-02-12
Release date:2016-12-21
Method:X-RAY DIFFRACTION (1.549 Å)
Cite:Antibodies Can Exploit Molecular Crowding to Bind New Antigens at Noncanonical Paratope Positions
CHEMISTRYSELECT, 1, 2016
5ULM
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STRUCTURE OF THE ASK1 CENTRAL REGULATORY REGION
Descriptor:Mitogen-activated protein kinase kinase kinase 5, GLYCEROL
Authors:Mace, P.D., Kumar, A., Caradoc-Davies, T.T.
Deposit date:2017-01-24
Release date:2017-03-01
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of autoregulatory scaffolding by apoptosis signal-regulating kinase 1.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5X49
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CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL X-PROLYL AMINOPEPTIDASE (XPNPEP3)
Descriptor:Probable Xaa-Pro aminopeptidase 3, MANGANESE (II) ION, DODECAETHYLENE GLYCOL, ...
Authors:Singh, R., Kumar, A., Ghosh, B., Jamdar, S., Makde, R.D.
Deposit date:2017-02-10
Release date:2017-05-17
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of the human aminopeptidase XPNPEP3 and comparison of its in vitro activity with Icp55 orthologs: Insights into diverse cellular processes.
J. Biol. Chem., 292, 2017
5XEV
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CRYSTAL STRUCTURE OF A NOVEL XAA-PRO DIPEPTIDASE FROM DEINOCOCCUS RADIODURANS
Descriptor:Xaa-Pro dipeptidase,Peptidase-related protein, ZINC ION, PHOSPHATE ION, ...
Authors:Are, V.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-04-06
Release date:2017-10-18
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a novel prolidase from Deinococcus radiodurans identifies new subfamily of bacterial prolidases.
Proteins, 85, 2017
5YZM
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (INACTIVE FORM) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative, ACETATE ION
Authors:Yadav, P., Jamdar, S.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-12-15
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of S9C peptidase (S154A) mutant from Deinococcus radiodurans R1
J.Biol.Chem., 2018
5YZN
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (ACTIVE FORM) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative
Authors:Yadav, P., Jamdar, S.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-12-15
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of S9C peptidase (S154A) mutant from Deinococcus radiodurans R1
J.Biol.Chem., 2018
5YZO
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CRYSTAL STRUCTURE OF S9 PEPTIDASE MUTANT (S514A) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative, DIMETHYL SULFOXIDE, ...
Authors:Yadav, P., Jamdar, S.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-12-15
Release date:2018-11-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of S9C peptidase (S154A) mutant from Deinococcus radiodurans R1
J.Biol.Chem., 2018
5Z40
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CRYSTAL STRUCTURE OF PYRROLIDONE CARBOXYLATE PEPTIDASE I FROM DEIONOCOCCUS RADIODURANS R1
Descriptor:Pyrrolidone-carboxylate peptidase
Authors:Agrawal, R., Kumar, A., Makde, R.D.
Deposit date:2018-01-09
Release date:2019-01-16
Method:X-RAY DIFFRACTION (1.837 Å)
Cite:Crystal structures of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans reveal the mechanism of L-pyroglutamate recognition
To Be Published
6A4R
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CRYSTAL STRUCTURE OF ASPARTATE BOUND PEPTIDASE E FROM SALMONELLA ENTERICA
Descriptor:Peptidase E, ASPARTIC ACID
Authors:Yadav, P., Chandravanshi, K., Goyal, V.D., Singh, R., Kumar, A., Gokhale, S.M., Makde, R.D.
Deposit date:2018-06-20
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.828 Å)
Cite:Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
6A4S
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CRYSTAL STRUCTURE OF PEPTIDASE E WITH ORDERED ACTIVE SITE LOOP FROM SALMONELLA ENTERICA
Descriptor:Peptidase E
Authors:Yadav, P., Chandravanshi, K., Goyal, V.D., Singh, R., Kumar, A., Gokhale, S.M., Makde, R.D.
Deposit date:2018-06-20
Release date:2018-10-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
6A4T
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CRYSTAL STRUCTURE OF PEPTIDASE E FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Peptidase E
Authors:Yadav, P., Goyal, V.G., Kumar, A., Gokhale, S.M., Makde, R.D.
Deposit date:2018-06-20
Release date:2019-06-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of peptidase E from Deinococcus radiodurans R1
To Be Published
6A8M
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N-TERMINAL DOMAIN OF FACT COMPLEX SUBUNIT SPT16 FROM EREMOTHECIUM GOSSYPII (ASHBYA GOSSYPII)
Descriptor:FACT complex subunit SPT16
Authors:Gaur, N.K., Are, V.N., Durani, V., Ghosh, B., Kumar, A., Kulkarni, K., Makde, R.D.
Deposit date:2018-07-09
Release date:2018-08-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:N-terminal domain of FACT complex subunit SPT16 from Eremothecium gossypii (Ashbya gossypii)
To Be Published
6A8Z
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CRYSTAL STRUCTURE OF M1 ZINC METALLOPEPTIDASE FROM DEINOCOCCUS RADIODURANS
Descriptor:Zinc metalloprotease, putative, ZINC ION, ...
Authors:Agrawal, R., Kumar, A., Makde, R.D.
Deposit date:2018-07-11
Release date:2019-07-17
Method:X-RAY DIFFRACTION (2.045 Å)
Cite:Crystal structure of two-domain M1 zinc-metallopeptidase from Deinococcus radiodurans
To Be Published
6A9T
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CRYSTAL STRUCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE (N-TERMINAL 58 RESIDUES DELETION)
Descriptor:Intermediate cleaving peptidase 55, MANGANESE (II) ION, GLYCINE, ...
Authors:Singh, R., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-07-16
Release date:2019-01-16
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
FEBS Lett., 593, 2019
6A9U
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CRYSTAL STRCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE BOUND TO APSTATIN INHIBITOR
Descriptor:Intermediate cleaving peptidase 55, apstatin, MANGANESE (II) ION
Authors:Singh, R., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-07-16
Release date:2019-01-16
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
FEBS Lett., 593, 2019
6A9V
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CRYSTAL STRUCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE (N-TERMINAL 42 RESIDUES DELETION)
Descriptor:Intermediate cleaving peptidase 55, MANGANESE (II) ION, TRIETHYLENE GLYCOL, ...
Authors:Singh, R., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-07-16
Release date:2019-01-16
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
FEBS Lett., 593, 2019
6IGP
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (INACTIVE STATE)FROM DEINOCOCCUS RADIODURANS R1 IN P212121
Descriptor:Acyl-peptide hydrolase, putative, GLYCEROL
Authors:Yadav, P., Goyal, V.D., Kumar, A., Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of inactive state of S9 peptidase from Deinococcus radiodurans R1 in Tris-Cl condition (condition-2)
J.Biol.Chem., 2018
6IGQ
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CRYSTAL STRUCTURE OF INACTIVE STATE OF S9 PEPTIDASE FROM DEINOCOCCUS RADIODURANS R1 (PMSF TREATED)
Descriptor:Acyl-peptide hydrolase, putative, GLYCEROL, ...
Authors:Yadav, P., Goyal, V.D., Kumar, A., Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of inactive state of S9 peptidase from Deinococcus radiodurans R1 in ammonium sulphate condition (condition 3)
J.Biol.Chem., 2018
6IGR
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (S514A MUTANT IN INACTIVE STATE) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative, GLYCEROL
Authors:Yadav, P., Gaur, N.K., Goyal, V.D., Kumar, A., Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of S9 peptidase (S514A mutant in inactive state) from Deinococcus radiodurans R1
to be published
6IKG
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CRYSTAL STRUCTURE OF SUBSTRATE-BOUND S9 PEPTIDASE (S514A MUTANT) FROM DEINOCOCCUS RADIODURANS
Descriptor:Acyl-peptide hydrolase, putative, MET-ALA-ALA, ...
Authors:Yadav, P., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-10-16
Release date:2018-11-14
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms
J. Biol. Chem., 294, 2019
2OOK
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CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION (YP_749275.1) FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 1.80 A RESOLUTION
Descriptor:Hypothetical protein, 1,2-ETHANEDIOL
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2007-01-25
Release date:2007-02-06
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding.
Acta Crystallogr.,Sect.F, 66, 2010
2Q3L
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CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM DUF3478 FAMILY WITH A SPOIIAA-LIKE FOLD (SHEW_3102) FROM SHEWANELLA LOIHICA PV-4 AT 2.25 A RESOLUTION
Descriptor:Uncharacterized protein, SODIUM ION, CHLORIDE ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2007-05-30
Release date:2007-06-12
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding.
Acta Crystallogr.,Sect.F, 66, 2010
3U21
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CRYSTAL STRUCTURE OF A FRAGMENT OF NUCLEAR FACTOR RELATED TO KAPPA-B-BINDING PROTEIN (RESIDUES 370-495) (NFRKB) FROM HOMO SAPIENS AT 2.18 A RESOLUTION
Descriptor:Nuclear factor related to kappa-B-binding protein, SODIUM ION
Authors:Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology, Partnership for Stem Cell Biology (STEMCELL)
Deposit date:2011-09-30
Release date:2011-11-02
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein.
Plos One, 7, 2012
4V3J
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STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A NOVEL MONOTREME- SPECIFIC PROTEIN FROM THE MILK OF THE PLATYPUS
Descriptor:MONOTREME LACTATING PROTEIN, N-ACETYL-D-GLUCOSAMINE
Authors:Kumar, A., Newman, J., Polekina, G., Adams, T.E., Sharp, J.A., Peat, T.S., Nicholas, K.R.
Deposit date:2014-10-20
Release date:2016-01-20
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural characterization of a novel monotreme-specific protein with antimicrobial activity from the milk of the platypus.
Acta Crystallogr F Struct Biol Commun, 74, 2018
2MI1
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SOMATOSTATIN-14 SOLUTION STRUCTURE IN 5% D-MANNITOL
Descriptor:Somatostatin-14
Authors:Anoop, A., Ranganathan, S., Pratihar, S.
Deposit date:2013-12-08
Release date:2014-05-07
Last modified:2019-08-28
Method:SOLUTION NMR
Cite:Elucidating the role of disulfide bond on amyloid formation and fibril reversibility of somatostatin-14: relevance to its storage and secretion.
J.Biol.Chem., 289, 2014