Author results

3JAI
  • Download 3jai
  • View 3jai
Molmil generated image of 3jai
STRUCTURE OF A MAMMALIAN RIBOSOMAL TERMINATION COMPLEX WITH ABCE1, ERF1(AAQ), AND THE UGA STOP CODON
Descriptor:uL2, uL3, uL4, ...
Authors:Brown, A., Shao, S., Murray, J., Hegde, R.S., Ramakrishnan, V.
Deposit date:2015-06-10
Release date:2015-08-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Structural basis for stop codon recognition in eukaryotes.
Nature, 524, 2015
3JAM
  • Download 3jam
  • View 3jam
Molmil generated image of 3jam
CRYOEM STRUCTURE OF 40S-EIF1A-EIF1 COMPLEX FROM YEAST
Descriptor:18S rRNA, uS2, eS1, ...
Authors:Llacer, J.L., Hussain, T., Ramakrishnan, V.
Deposit date:2015-06-17
Release date:2015-08-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex.
Mol.Cell, 59, 2015
3JAP
  • Download 3jap
  • View 3jap
Molmil generated image of 3jap
STRUCTURE OF A PARTIAL YEAST 48S PREINITIATION COMPLEX IN CLOSED CONFORMATION
Descriptor:Met-tRNAi (U31:A39 variant), 18S rRNA, mRNA, ...
Authors:Llacer, J.L., Hussain, T., Ramakrishnan, V.
Deposit date:2015-06-18
Release date:2015-08-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex.
Mol.Cell, 59, 2015
3JAQ
  • Download 3jaq
  • View 3jaq
Molmil generated image of 3jaq
STRUCTURE OF A PARTIAL YEAST 48S PREINITIATION COMPLEX IN OPEN CONFORMATION
Descriptor:Met-tRNAi, 18S rRNA, mRNA, ...
Authors:Llacer, J.L., Hussain, T., Ramakrishnan, V.
Deposit date:2015-06-18
Release date:2015-08-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex.
Mol.Cell, 59, 2015
3OTO
  • Download 3oto
  • View 3oto
Molmil generated image of 3oto
CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM A KSGA MUTANT OF THERMUS THERMOPHILUS (HB8)
Descriptor:16S rRNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Demirci, H., Murphy IV, F., Belardinelli, R., Kelley, A.C., Ramakrishnan, V., Gregory, S.T., Dahlberg, A.E., Jogl, G.
Deposit date:2010-09-13
Release date:2010-09-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.69 Å)
Cite:Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function.
Rna, 16, 2010
487D
  • Download 487d
  • View 487d
Molmil generated image of 487d
SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP OF THE LARGE 50S SUBUNIT AT 7.5 ANGSTROMS RESOLUTION
Descriptor:PROTEIN (50S L1 RIBOSOMAL PROTEIN), PROTEIN (50S L2 RIBOSOMAL PROTEIN), PROTEIN (50S L6 RIBOSOMAL PROTEIN), ...
Authors:Brimacombe, R., Mueller, F.
Deposit date:2000-02-23
Release date:2000-04-10
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.
J.Mol.Biol., 298, 2000
4AQY
  • Download 4aqy
  • View 4aqy
Molmil generated image of 4aqy
STRUCTURE OF RIBOSOME-APRAMYCIN COMPLEXES
Descriptor:16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Matt, T., Ng, C.L., Lang, K., Sha, S.H., Akbergenov, R., Shcherbakov, D., Meyer, M., Duscha, S., Xie, J., Dubbaka, S.R., Perez-Fernandez, D., Vasella, A., Ramakrishnan, V., Schacht, J., Bottger, E.C.
Deposit date:2012-04-20
Release date:2012-07-18
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Dissociation of Antibacterial Activity and Aminoglycoside Ototoxicity in the 4-Monosubstituted 2-Deoxystreptamine Apramycin.
Proc.Natl.Acad.Sci.USA, 109, 2012
4B3M
  • Download 4b3m
  • View 4b3m
Molmil generated image of 4b3m
CRYSTAL STRUCTURE OF THE 30S RIBOSOME IN COMPLEX WITH COMPOUND 1
Descriptor:16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Ng, C.L., Lang, K., Shcherbakov, D., Matt, T., Perez-Fernandez, D., Patak, R., Meyer, M., Duscha, S., Akbergenov, R., Boukari, H., Freihofer, P., Kudyba, I., Reddy, M.S.K., Nandurikar, R.S., Ramakrishnan, V., Vasella, A., Bottger, E.C.
Deposit date:2012-07-25
Release date:2013-08-07
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics
Nat.Commun., 5, 2014
4B3R
  • Download 4b3r
  • View 4b3r
Molmil generated image of 4b3r
CRYSTAL STRUCTURE OF THE 30S RIBOSOME IN COMPLEX WITH COMPOUND 30
Descriptor:16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Ng, C.L., Lang, K., Shcherbakov, D., Matt, T., Perez-Fernandez, D., Patak, R., Meyer, M., Duscha, S., Akbergenov, R., Boukari, H., Freihofer, P., Kudyba, I., Reddy, M.S.K., Nandurikar, R.S., Ramakrishnan, V., Vasella, A., Bottger, E.C.
Deposit date:2012-07-26
Release date:2013-08-07
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics
Nat.Commun., 5, 2014
4B3S
  • Download 4b3s
  • View 4b3s
Molmil generated image of 4b3s
CRYSTAL STRUCTURE OF THE 30S RIBOSOME IN COMPLEX WITH COMPOUND 37
Descriptor:16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Ng, C.L., Lang, K., Shcherbakov, D., Matt, T., Perez-Fernandez, D., Patak, R., Meyer, M., Duscha, S., Akbergenov, R., Boukari, H., Freihofer, P., Kudyba, I., Reddy, M.S.K., Nandurikar, R.S., Ramakrishnan, V., Vasella, A., Bottger, E.C.
Deposit date:2012-07-26
Release date:2013-08-07
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics
Nat.Commun., 5, 2014
4B3T
  • Download 4b3t
  • View 4b3t
Molmil generated image of 4b3t
CRYSTAL STRUCTURE OF THE 30S RIBOSOME IN COMPLEX WITH COMPOUND 39
Descriptor:16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Ng, C.L., Lang, K., Shcherbakov, D., Matt, T., Perez-Fernandez, D., Patak, R., Meyer, M., Duscha, S., Akbergenov, R., Boukari, H., Freihofer, P., Kudyba, I., Reddy, M.S.K., Nandurikar, R.S., Ramakrishnan, V., Vasella, A., Bottger, E.C.
Deposit date:2012-07-26
Release date:2013-08-07
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics
Nat.Commun., 5, 2014
4FXI
  • Download 4fxi
  • View 4fxi
Molmil generated image of 4fxi
CRYSTAL STRUCTURE OF THE ISOLATED E. COLI RELE TOXIN, P21 FORM
Descriptor:mRNA interferase RelE, SULFATE ION
Authors:Brodersen, D.E., Boggild, A., Sofos, N.
Deposit date:2012-07-03
Release date:2012-08-29
Last modified:2012-12-26
Method:X-RAY DIFFRACTION (1.8003 Å)
Cite:The crystal structure of the intact E. coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity.
Structure, 20, 2012
4JV5
  • Download 4jv5
  • View 4jv5
Molmil generated image of 4jv5
CRYSTAL STRUCTURES OF PSEUDOURIDINILATED STOP CODONS WITH ASLS
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Fernandez, I.S., Ng, C.L., Kelley, A.C., Guowei, W., Yu, Y.T., Ramakrishnan, V.
Deposit date:2013-03-25
Release date:2013-06-26
Last modified:2013-08-21
Method:X-RAY DIFFRACTION (3.162 Å)
Cite:Unusual base pairing during the decoding of a stop codon by the ribosome.
Nature, 500, 2013
4JYA
  • Download 4jya
  • View 4jya
Molmil generated image of 4jya
CRYSTAL STRUCTURES OF PSEUDOURIDINILATED STOP CODONS WITH ASLS
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Fernandez, I.S., Ng, C.L., Kelley, A.C., Guowei, W., Yu, Y.T., Ramakrishnan, V.
Deposit date:2013-03-29
Release date:2013-06-26
Last modified:2013-08-21
Method:X-RAY DIFFRACTION (3.098 Å)
Cite:Unusual base pairing during the decoding of a stop codon by the ribosome.
Nature, 500, 2013
4K0K
  • Download 4k0k
  • View 4k0k
Molmil generated image of 4k0k
CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A SERINE-ASL AND MRNA CONTAINING A STOP CODON
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Fernandez, I.S., Ng, C.L., Kelley, A.C., Guowei, W., Yu, Y.T., Ramakrishnan, V.
Deposit date:2013-04-04
Release date:2013-06-26
Last modified:2013-08-21
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Unusual base pairing during the decoding of a stop codon by the ribosome.
Nature, 500, 2013
4KHP
  • Download 4khp
  • View 4khp
Molmil generated image of 4khp
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH DE-6-MSA-PACTAMYCIN
Descriptor:16S Ribosomal RNA, 30S Ribosomal protein S2, 30S Ribosomal protein S3, ...
Authors:Tourigny, D.S., Fernandez, I.S., Kelley, A.C., Ramakrishnan, V.
Deposit date:2013-05-01
Release date:2013-06-05
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of a Bioactive Pactamycin Analog Bound to the 30S Ribosomal Subunit.
J.Mol.Biol., 425, 2013
4V4R
  • Download 4v4r
  • View 4v4r
Molmil generated image of 4v4r
CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX.
Descriptor:16S ribosomal RNA, P-site tRNA (Phe), E-site tRNA (Phe), ...
Authors:Petry, S., Brodersen, D.E., Murphy IV, F.V., Dunham, C.M., Selmer, M., Tarry, M.J., Kelley, A.C., Ramakrishnan, V.
Deposit date:2005-09-30
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (5.9 Å)
Cite:Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon.
Cell(Cambridge,Mass.), 123, 2005
4V4S
  • Download 4v4s
  • View 4v4s
Molmil generated image of 4v4s
CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX.
Descriptor:16S ribosomal RNA, P-site tRNA (Phe), E-site tRNA (Phe), ...
Authors:Petry, S., Brodersen, D.E., Murphy IV, F.V., Dunham, C.M., Selmer, M., Tarry, M.J., Kelley, A.C., Ramakrishnan, V.
Deposit date:2005-10-12
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (6.76 Å)
Cite:Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon.
Cell(Cambridge,Mass.), 123, 2005
4V4T
  • Download 4v4t
  • View 4v4t
Molmil generated image of 4v4t
CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A STOP CODON IN THE A-SITE.
Descriptor:16S ribosomal RNA, P-site tRNA (Phe), E-site tRNA (Phe), ...
Authors:Petry, S., Brodersen, D.E., Murphy IV, F.V., Dunham, C.M., Selmer, M., Tarry, M.J., Kelley, A.C., Ramakrishnan, V.
Deposit date:2005-10-12
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (6.46 Å)
Cite:Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon.
Cell(Cambridge,Mass.), 123, 2005
4V51
  • Download 4v51
  • View 4v51
Molmil generated image of 4v51
STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN
Descriptor:16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Selmer, M., Dunham, C.M., Murphy, F.V., Weixlbaumer, A., Petry, S., Weir, J.R., Kelley, A.C., Ramakrishnan, V.
Deposit date:2006-07-31
Release date:2014-07-09
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the 70S ribosome complexed with mRNA and tRNA.
Science, 313, 2006
4V5A
  • Download 4v5a
  • View 4v5a
Molmil generated image of 4v5a
STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET
Descriptor:16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Petry, S., Dunham, C.M., Selmer, M., Kelley, A.C., Ramakrishnan, V.
Deposit date:2007-06-28
Release date:2014-07-09
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the ribosome recycling factor bound to the ribosome.
Nat. Struct. Mol. Biol., 14, 2007
4V5C
  • Download 4v5c
  • View 4v5c
Molmil generated image of 4v5c
STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A-SITE TRNA, DEACYLATED P-SITE TRNA, AND E-SITE TRNA.
Descriptor:16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Voorhees, R.M., Weixlbaumer, A., Loakes, D., Kelley, A.C., Ramakrishnan, V.
Deposit date:2009-03-24
Release date:2014-07-09
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Insights Into Substrate Stabilization from Snapshots of the Peptidyl Transferase Center of the Intact 70S Ribosome
Nat.Struct.Mol.Biol., 16, 2009
4V5D
  • Download 4v5d
  • View 4v5d
Molmil generated image of 4v5d
STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA.
Descriptor:16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Voorhees, R.M., Weixlbaumer, A., Loakes, D., Kelley, A.C., Ramakrishnan, V.
Deposit date:2009-03-24
Release date:2014-07-09
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.
Nat. Struct. Mol. Biol., 16, 2009
4V5E
  • Download 4v5e
  • View 4v5e
Molmil generated image of 4v5e
INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME
Descriptor:16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Weixlbaumer, A., Jin, H., Neubauer, C., Voorhees, R.M., Petry, S., Kelley, A.C., Ramakrishnan, V.
Deposit date:2009-04-30
Release date:2014-07-09
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Insights Into Translational Termination from the Structure of Rf2 Bound to the Ribosome.
Science, 322, 2008
4V5F
  • Download 4v5f
  • View 4v5f
Molmil generated image of 4v5f
THE STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE POST-TRANSLOCATIONAL STATE
Descriptor:16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Gao, Y.-G., Selmer, M., Dunham, C.M., Weixlbaumer, A., Kelley, A.C., Ramakrishnan, V.
Deposit date:2009-09-01
Release date:2014-07-09
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The structure of the ribosome with elongation factor G trapped in the posttranslocational state.
Science, 326, 2009
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan