Author results

3EWO
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IBV NSP3 ADRP DOMAIN
Descriptor:Non-structural protein 3
Authors:Xu, Y., Cong, L., Chen, C., Wei, L., Zhao, Q., Xu, X., Ma, Y., Bartlam, M., Rao, Z.
Deposit date:2008-10-16
Release date:2009-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of two coronavirus ADP-ribose-1''-monophosphatases and their complexes with ADP-Ribose: a systematic structural analysis of the viral ADRP domain.
J.Virol., 83, 2009
3EWP
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COMPLEX OF SUBSTRATE ADP-RIBOSE WITH IBV NSP3 ADRP DOMAIN
Descriptor:Non-structural protein 3, ADENOSINE-5-DIPHOSPHORIBOSE
Authors:Xu, Y., Cong, L., Chen, C., Wei, L., Zhao, Q., Xu, X., Ma, Y., Bartlam, M., Rao, Z.
Deposit date:2008-10-16
Release date:2009-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of two coronavirus ADP-ribose-1''-monophosphatases and their complexes with ADP-Ribose: a systematic structural analysis of the viral ADRP domain.
J.Virol., 83, 2009
3EWQ
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HCOV-229E NSP3 ADRP DOMAIN
Descriptor:Non-structural protein 3
Authors:Xu, Y., Cong, L., Chen, C., Wei, L., Zhao, Q., Xu, X., Ma, Y., Bartlam, M., Rao, Z.
Deposit date:2008-10-16
Release date:2009-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of two coronavirus ADP-ribose-1''-monophosphatases and their complexes with ADP-Ribose: a systematic structural analysis of the viral ADRP domain.
J.Virol., 83, 2009
3EWR
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COMPLEX OF SUBSTRATE ADP-RIBOSE WITH HCOV-229E NSP3 ADRP DOMAIN
Descriptor:Non-structural protein 3, ADENOSINE-5-DIPHOSPHORIBOSE
Authors:Xu, Y., Cong, L., Chen, C., Wei, L., Zhao, Q., Xu, X., Ma, Y., Bartlam, M., Rao, Z.
Deposit date:2008-10-16
Release date:2009-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structures of two coronavirus ADP-ribose-1''-monophosphatases and their complexes with ADP-Ribose: a systematic structural analysis of the viral ADRP domain.
J.Virol., 83, 2009
2NPP
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STRUCTURE OF THE PROTEIN PHOSPHATASE 2A HOLOENZYME
Descriptor:Protein Phosphatase 2, regulatory subunit A (PR 65), alpha isoform, ...
Authors:Xu, Y., Chen, Y., Xing, Y., Chao, Y., Shi, Y.
Deposit date:2006-10-28
Release date:2006-12-12
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the protein phosphatase 2A holoenzyme
Cell(Cambridge,Mass.), 127, 2006
1DU9
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SOLUTION STRUCTURE OF BMP02, A NATURAL SCORPION TOXIN WHICH BLOCKS APAMIN-SENSITIVE CALCIUM-ACTIVATED POTASSIUM CHANNELS, 25 STRUCTURES
Descriptor:BMP02 NEUROTOXIN
Authors:Xu, Y., Wu, J., Pei, J., Shi, Y., Ji, Y., Tong, Q.
Deposit date:2000-01-17
Release date:2000-02-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of BmP02, a new potassium channel blocker from the venom of the Chinese scorpion Buthus martensi Karsch.
Biochemistry, 39, 2000
3DW8
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STRUCTURE OF A PROTEIN PHOSPHATASE 2A HOLOENZYME WITH B55 SUBUNIT
Descriptor:Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform, Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform, Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform, ...
Authors:Xu, Y., Chen, Y., Zhang, P., Jeffrey, P.D., Shi, Y.
Deposit date:2008-07-21
Release date:2008-10-07
Last modified:2013-10-16
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of a protein phosphatase 2A holoenzyme: insights into B55-mediated Tau dephosphorylation.
Mol.Cell, 31, 2008
1CXR
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AUTOMATED 2D NOESY ASSIGNMENT AND STRUCTURE CALCULATION OF CRAMBIN(S22/I25) WITH SELF-CORRECTING DISTANCE GEOMETRY BASED NOAH/DIAMOD PROGRAMS
Descriptor:CRAMBIN
Authors:Xu, Y., Wu, J., Gorenstein, D., Braun, W.
Deposit date:1999-08-30
Release date:1999-09-07
Last modified:2018-03-14
Method:SOLUTION NMR
Cite:Automated 2D NOESY assignment and structure calculation of Crambin(S22/I25) with the self-correcting distance geometry based NOAH/DIAMOD programs.
J.Magn.Reson., 136, 1999
1K99
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SOLUTION STRUCTURE OF THE FIRST HMG BOX IN HUMAN UPSTREAM BINDING FACTOR
Descriptor:Upstream binding factor 1
Authors:Xu, Y., Yang, W., Wu, J., Shi, Y.
Deposit date:2001-10-28
Release date:2001-11-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the first HMG box domain in human upstream binding factor.
Biochemistry, 41, 2002
1WDF
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CRYSTAL STRUCTURE OF MHV SPIKE PROTEIN FUSION CORE
Descriptor:E2 glycoprotein
Authors:Xu, Y., Liu, Y., Lou, Z., Qin, L., Li, X., Bai, Z., Tien, P., Gao, G.F., Rao, Z.
Deposit date:2004-05-14
Release date:2004-06-15
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis for Coronavirus-mediated Membrane Fusion: CRYSTAL STRUCTURE OF MOUSE HEPATITIS VIRUS SPIKE PROTEIN FUSION CORE
J.Biol.Chem., 279, 2004
1WDG
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CRYSTAL STRUCTURE OF MHV SPIKE PROTEIN FUSION CORE
Descriptor:E2 glycoprotein
Authors:Xu, Y., Liu, Y., Lou, Z., Qin, L., Li, X., Bai, Z., Tien, P., Gao, G.F., Rao, Z.
Deposit date:2004-05-14
Release date:2004-06-15
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structural Basis for Coronavirus-mediated Membrane Fusion: CRYSTAL STRUCTURE OF MOUSE HEPATITIS VIRUS SPIKE PROTEIN FUSION CORE
J.Biol.Chem., 279, 2004
1WNC
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CRYSTAL STRUCTURE OF THE SARS-COV SPIKE PROTEIN FUSION CORE
Descriptor:E2 glycoprotein
Authors:Xu, Y., Lou, Z., Liu, Y., Pang, H., Tien, P., Gao, G.F., Rao, Z.
Deposit date:2004-07-29
Release date:2004-09-07
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of severe acute respiratory syndrome coronavirus spike protein fusion core
J.Biol.Chem., 279, 2004
1WP7
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CRYSTAL STRUCTURE OF NIPAH VIRUS FUSION CORE
Descriptor:fusion protein
Authors:Xu, Y., Liu, Y., Lou, Z., Su, N., Bai, Z., Gao, G.F., Rao, Z.
Deposit date:2004-08-31
Release date:2005-11-15
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Nipah Virus fusion core
To be Published
2EEP
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PROLYL TRIPEPTIDYL AMINOPEPTIDASE COMPLEXED WITH AN INHIBITOR
Descriptor:Dipeptidyl aminopeptidase IV, putative, SULFATE ION, ...
Authors:Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-02-16
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
2H25
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SOLUTION STRUCTURE OF MALTOSE BINDING PROTEIN COMPLEXED WITH BETA-CYCLODEXTRIN
Descriptor:Maltose-binding periplasmic protein
Authors:Xu, Y., Lin, Z., Zheng, Y., Yang, D.
Deposit date:2006-05-18
Release date:2006-10-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A new strategy for structure determination of large proteins in solution without deuteration
Nat.Methods, 3, 2006
2Z3W
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PROLYL TRIPEPTIDYL AMINOPEPTIDASE MUTANT E636A
Descriptor:Dipeptidyl aminopeptidase IV, SULFATE ION, GLYCEROL
Authors:Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-06-07
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
2Z3Z
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PROLYL TRIPEPTIDYL AMINOPEPTIDASE MUTANT E636A COMPLEXD WITH AN INHIBITOR
Descriptor:Dipeptidyl aminopeptidase IV, SULFATE ION, [(2R)-1-(L-ALANYL-L-ISOLEUCYL)PYRROLIDIN-2-YL]BORONIC ACID
Authors:Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-06-09
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
3BOB
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CARBONIC ANHYDRASE FROM MARINE DIATOM THALASSIOSIRA WEISSFLOGII- CADMIUM BOUND DOMAIN 2
Descriptor:Cadmium-specific carbonic anhydrase, CADMIUM ION
Authors:Xu, Y., Feng, L., Jeffrey, P.D., Shi, Y., Morel, F.M.M.
Deposit date:2007-12-17
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
3BOC
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CARBONIC ANHYDRASE FROM MARINE DIATOM THALASSIOSIRA WEISSFLOGII- ZINC BOUND DOMAIN 2 (CDCA1-R2)
Descriptor:Cadmium-specific carbonic anhydrase, ZINC ION
Authors:Xu, Y., Feng, L., Jeffrey, P.D., Shi, Y., Morel, F.M.M.
Deposit date:2007-12-17
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
3BOE
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CARBONIC ANHYDRASE FROM MARINE DIATOM THALASSIOSIRA WEISSFLOGII- CADMIUM BOUND DOMAIN 2 WITH ACETATE (CDCA1-R2)
Descriptor:Cadmium-specific carbonic anhydrase, CADMIUM ION, ACETATE ION
Authors:Xu, Y., Feng, L., Jeffrey, P.D., Shi, Y., Morel, F.M.M.
Deposit date:2007-12-17
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
3BOH
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CARBONIC ANHYDRASE FROM MARINE DIATOM THALASSIOSIRA WEISSFLOGII- CADMIUM BOUND DOMAIN 1 WITH ACETATE (CDCA1-R1)
Descriptor:Cadmium-specific carbonic anhydrase, CADMIUM ION, ACETATE ION
Authors:Xu, Y., Feng, L., Jeffrey, P.D., Shi, Y., Morel, F.M.M.
Deposit date:2007-12-17
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
3BOJ
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CARBONIC ANHYDRASE FROM MARINE DIATOM THALASSIOSIRA WEISSFLOGII- CADMIUM BOUND DOMAIN 1 WITHOUT BOUND METAL (CDCA1-R1)
Descriptor:Cadmium-specific carbonic anhydrase, ACETATE ION
Authors:Xu, Y., Feng, L., Jeffrey, P.D., Shi, Y., Morel, F.M.M.
Deposit date:2007-12-17
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
4J0E
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CRYSTAL STRUCTURE OF 3-HYDROXYACYL-COA DEHYDROGENASE FROM CAENORHADBITIS ELEGANS IN P1 SPACE GROUP
Descriptor:Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1
Authors:Xu, Y., Sun, F., Zhai, Y.
Deposit date:2013-01-30
Release date:2014-03-19
Last modified:2015-02-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Purification, crystallization and preliminary crystallographic analysis of 3-hydroxyacyl-CoA dehydrogenase from Caenorhabditis elegans.
Acta Crystallogr.,Sect.F, 69, 2013
4J0F
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CRYSTAL STRUCTURE OF 3-HYDROXYACYL-COA DEHYDROGENASE FROM CAENORHADBITIS ELEGANS IN P212121 SPACE GROUP
Descriptor:Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1
Authors:Xu, Y., Sun, F., Zhai, Y.
Deposit date:2013-01-30
Release date:2014-03-19
Last modified:2015-02-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Purification, crystallization and preliminary crystallographic analysis of 3-hydroxyacyl-CoA dehydrogenase from Caenorhabditis elegans.
Acta Crystallogr.,Sect.F, 69, 2013
5B7G
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STRUCTURES AND FUNCTIONAL ANALYSIS OF PERIPLASMIC 5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE FROM AEROMONAS HYDROPHILA
Descriptor:MTA/SAH nucleosidase, ADENINE, GLYCEROL
Authors:Xu, Y.
Deposit date:2016-06-07
Release date:2017-01-25
Last modified:2017-12-13
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Structural and Functional Analyses of Periplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase from Aeromonas hydrophila.
Biochemistry, 56, 2017