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8JWD
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BU of 8jwd by Molmil
Histidine kinase QseE sensor domain of Escherichia coli O157:H7
Descriptor: 1,2-ETHANEDIOL, histidine kinase
Authors:Matsumoto, K, Fukuda, Y, Inoue, T.
Deposit date:2023-06-28
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli.
Acta Crystallogr.,Sect.F, 79, 2023
3AM9
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BU of 3am9 by Molmil
Complex of bovine xanthine dehydrogenase and trihydroxy FYX-051
Descriptor: 4-[5-(2,6-dioxo-1,2,3,6-tetrahydropyridin-4-yl)-1H-1,2,4-triazol-3-yl]-6-oxo-1,6-dihydropyridine-2-carbonitrile, BICARBONATE ION, CALCIUM ION, ...
Authors:Matsumoto, K, Okamoto, K, Ashizawa, N, Matsumura, T, Kusano, T, Nishino, T.
Deposit date:2010-08-18
Release date:2010-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:FYX-051: A Novel and Potent Hybrid-Type Inhibitor of Xanthine Oxidoreductase
J.Pharmacol.Exp.Ther., 336, 2011
7X6H
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BU of 7x6h by Molmil
Outer membrane lipoprotein QseG of Escherichia coli O157:H7
Descriptor: Quorum-sensing regulator protein G
Authors:Matsumoto, K, Fukuda, Y, Inoue, T.
Deposit date:2022-03-07
Release date:2023-03-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli.
Acta Crystallogr.,Sect.F, 79, 2023
7X6F
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BU of 7x6f by Molmil
Outer membrane lipoprotein QseG of Escherichia coli O157:H7
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CITRATE ANION, ...
Authors:Matsumoto, K, Fukuda, Y, Inoue, T.
Deposit date:2022-03-07
Release date:2023-03-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli.
Acta Crystallogr.,Sect.F, 79, 2023
7X6G
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BU of 7x6g by Molmil
Outer membrane lipoprotein QseG of Escherichia coli O157:H7
Descriptor: Quorum-sensing regulator protein G
Authors:Matsumoto, K, Fukuda, Y, Inoue, T.
Deposit date:2022-03-07
Release date:2023-03-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli.
Acta Crystallogr.,Sect.F, 79, 2023
2E27
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BU of 2e27 by Molmil
Crystal structure of Fv fragment of anti-ciguatoxin antibody complexed with ABC-ring of ciguatoxin
Descriptor: 3,7:6,10:9,14-TRIANHYDRO-2,5,11,12,13-PENTADEOXY-4-O-(METHOXYMETHYL)-L-ARABINO-L-ALLO-TETRADEC-12-ENONIC ACID, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Yokota, A, Tanaka, Y, Tsumoto, K.
Deposit date:2006-11-08
Release date:2007-11-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Critical contribution of aromatic rings to specific recognition of polyether rings. The case of ciguatoxin CTX3C-ABC and its specific antibody 1C49.
J.Biol.Chem., 283, 2008
5X08
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BU of 5x08 by Molmil
Crystal structure of broadly neutralizing anti-HIV-1 antibody 4E10, mutant Npro, with peptide bound
Descriptor: ACETATE ION, CHLORIDE ION, Envelope glycoprotein gp160, ...
Authors:Caaveiro, J.M.M, Rujas, E, Nieva, J.L, Tsumoto, K.
Deposit date:2017-01-20
Release date:2017-04-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Functional Contacts between MPER and the Anti-HIV-1 Broadly Neutralizing Antibody 4E10 Extend into the Core of the Membrane
J. Mol. Biol., 429, 2017
4WD4
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BU of 4wd4 by Molmil
Crystal structure of human HO1 H25R
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Caaveiro, J.M.M, Morante, K, Sigala, P, Tsumoto, K.
Deposit date:2014-09-06
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:In-Cell Enzymology To Probe His-Heme Ligation in Heme Oxygenase Catalysis
Biochemistry, 55, 2016
4W4O
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BU of 4w4o by Molmil
High-resolution crystal structure of Fc bound to its human receptor Fc-gamma-RI
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, GLYCEROL, ...
Authors:Caaveiro, J.M.M, Kiyoshi, M, Tsumoto, K.
Deposit date:2014-08-15
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for binding of human IgG1 to its high-affinity human receptor Fc gamma RI
Nat Commun, 6, 2015
1FKV
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BU of 1fkv by Molmil
RECOMBINANT GOAT ALPHA-LACTALBUMIN T29I
Descriptor: ALPHA-LACTALBUMIN, CALCIUM ION
Authors:Horii, K, Matsushima, M, Tsumoto, K, Kumagai, I.
Deposit date:2000-08-10
Release date:2001-02-14
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Contribution of Thr29 to the thermodynamic stability of goat alpha-lactalbumin as determined by experimental and theoretical approaches.
Proteins, 45, 2001
1FKQ
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BU of 1fkq by Molmil
RECOMBINANT GOAT ALPHA-LACTALBUMIN T29V
Descriptor: ALPHA-LACTALBUMIN, CALCIUM ION
Authors:Horii, K, Matsushima, M, Tsumoto, K, Kumagai, I.
Deposit date:2000-08-10
Release date:2001-02-14
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of Thr29 to the thermodynamic stability of goat alpha-lactalbumin as determined by experimental and theoretical approaches.
Proteins, 45, 2001
4WDC
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BU of 4wdc by Molmil
High-resolution crystal structure of water-soluble FraC (mutation F16P)
Descriptor: Fragaceatoxin C
Authors:Caaveiro, J.M.M, Morante, K, Tsumoto, K.
Deposit date:2014-09-08
Release date:2015-03-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:A Pore-Forming Toxin Requires a Specific Residue for Its Activity in Membranes with Particular Physicochemical Properties
J.Biol.Chem., 290, 2015
1C08
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BU of 1c08 by Molmil
CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX
Descriptor: ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10), LYSOZYME
Authors:Shiroishi, M, Kondo, H, Matsushima, M, Tsumoto, K, Kumagai, I.
Deposit date:1999-07-15
Release date:2000-07-19
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of anti-Hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces.
J.Biol.Chem., 274, 1999
3QUG
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BU of 3qug by Molmil
Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Gallium-porphyrin
Descriptor: GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING GA, ...
Authors:Moriwaki, Y, Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2011-02-24
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis of recognition of antibacterial porphyrins by heme-transporter IsdH-NEAT3 of Staphylococcus aureus.
Biochemistry, 50, 2011
3QUH
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BU of 3quh by Molmil
Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Manganese(III)-porphyrin
Descriptor: GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING MN
Authors:Moriwaki, Y, Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2011-02-24
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of recognition of antibacterial porphyrins by heme-transporter IsdH-NEAT3 of Staphylococcus aureus.
Biochemistry, 50, 2011
3GP7
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BU of 3gp7 by Molmil
Staphylococcal Enterotoxin B mutant N23YK97SK98S
Descriptor: Enterotoxin type B
Authors:Yanaka, S, Tanaka, Y, Tsumoto, K.
Deposit date:2009-03-23
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Contribution of the flexible loop region to the function of staphylococcal enterotoxin B
Protein Eng.Des.Sel., 23, 2010
4WY7
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BU of 4wy7 by Molmil
Crystal structure of recombinant 4E10 expressed in Escherichia coli with epitope bound
Descriptor: Envelope glycoprotein gp160, Fab 4E10 Heavy chain, Fab 4E10Light chain, ...
Authors:Rujas, E, Morante, K, Tsumoto, K, Nieva, J.L, Caaveiro, J.M.M.
Deposit date:2014-11-16
Release date:2015-03-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Atomic Structure of the HIV-1 gp41 Transmembrane Domain and Its Connection to the Immunogenic Membrane-proximal External Region.
J.Biol.Chem., 290, 2015
4W4N
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BU of 4w4n by Molmil
Crystal structure of human Fc at 1.80 A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Caaveiro, J.M.M, Kiyoshi, M, Tsumoto, K.
Deposit date:2014-08-15
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for binding of human IgG1 to its high-affinity human receptor Fc gamma RI
Nat Commun, 6, 2015
4G5H
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BU of 4g5h by Molmil
Crystal structure of capsular polysaccharide synthesizing enzyme CapE from Staphylococcus aureus in complex with by-product
Descriptor: Capsular polysaccharide synthesis enzyme Cap8E, FORMIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Miyafusa, T, Caaveiro, J.M.M, Tanaka, Y, Tsumoto, K.
Deposit date:2012-07-18
Release date:2013-08-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Dynamic elements govern the catalytic activity of CapE, a capsular polysaccharide-synthesizing enzyme from Staphylococcus aureus.
Febs Lett., 587, 2013
5JYM
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BU of 5jym by Molmil
Human P-cadherin EC12 with scFv TSP11 bound
Descriptor: Antibody scFv TSP11, CALCIUM ION, Cadherin-3
Authors:Caaveiro, J.M.M, Kudo, S, Tsumoto, K.
Deposit date:2016-05-14
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Disruption of cell adhesion by an antibody targeting the cell-adhesive intermediate (X-dimer) of human P-cadherin
Sci Rep, 7, 2017
5JYL
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BU of 5jyl by Molmil
Human P-cadherin MEC1 with scFv TSP7 bound
Descriptor: CHLORIDE ION, Cadherin-3, GLYCEROL, ...
Authors:Caaveiro, J.M.M, Kudo, S, Tsumoto, K.
Deposit date:2016-05-14
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Disruption of cell adhesion by an antibody targeting the cell-adhesive intermediate (X-dimer) of human P-cadherin
Sci Rep, 7, 2017
4TSO
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BU of 4tso by Molmil
Crystal structure of FraC with DHPC bound (crystal form I)
Descriptor: 1,2-dihexanoyl-sn-glycero-3-phosphocholine, Fragaceatoxin C, PHOSPHATE ION, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSP
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BU of 4tsp by Molmil
Crystal structure of FraC with DHPC bound (crystal form II)
Descriptor: 1,2-dihexanoyl-sn-glycero-3-phosphocholine, Fragaceatoxin C, PHOSPHATE ION, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSY
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BU of 4tsy by Molmil
Crystal structure of FraC with lipids
Descriptor: 2-[[(E,2S,3R)-2-(hexanoylamino)-3-oxidanyl-dec-4-enoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium, Fragaceatoxin C, HEPTANE-1,2,3-TRIOL, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSL
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BU of 4tsl by Molmil
Crystal structure of FraC with POC bound (crystal form I)
Descriptor: ACETATE ION, FORMIC ACID, Fragaceatoxin C, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015

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