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1AFX
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BU of 1afx by Molmil
UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES
Descriptor: RNA (5'-R(*GP*GP*UP*GP*UP*GP*AP*AP*CP*AP*CP*C)-3')
Authors:Butcher, S.E, Dieckmann, T, Feigon, J.
Deposit date:1997-03-15
Release date:1997-05-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1B36
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BU of 1b36 by Molmil
SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES
Descriptor: RNA (RNA LOOP B)
Authors:Butcher, S.E, Dieckmann, T, Feigon, J.
Deposit date:1998-12-17
Release date:1998-12-23
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1TLR
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BU of 1tlr by Molmil
SOLUTION STRUCTURE OF TETRALOOP RECEPTOR RNA, NMR, 20 STRUCTURES
Descriptor: RNA TETRALOOP RECEPTOR (5'-R(GGCCUAAGACUUCGGUUAUGGCC)-3')
Authors:Butcher, S.E, Dieckmann, T, Feigon, J.
Deposit date:1997-09-11
Release date:1997-11-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a GAAA tetraloop receptor RNA.
EMBO J., 16, 1997
2ADT
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BU of 2adt by Molmil
NMR structure of a 30 kDa GAAA tetraloop-receptor complex.
Descriptor: 43-MER
Authors:Davis, J.H, Tonelli, M, Scott, L.G, Jaeger, L, Williamson, J.R, Butcher, S.E.
Deposit date:2005-07-20
Release date:2005-07-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:RNA Helical Packing in Solution: NMR Structure of a 30 kDa GAAA Tetraloop-Receptor Complex
J.Mol.Biol., 351, 2005
5TF6
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BU of 5tf6 by Molmil
Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core
Descriptor: CHLORIDE ION, GLYCEROL, POTASSIUM ION, ...
Authors:Montemayor, E.J, Brow, D.A, Butcher, S.E.
Deposit date:2016-09-24
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.
Acta Crystallogr D Struct Biol, 73, 2017
2KH9
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BU of 2kh9 by Molmil
Solution structure of yeast Prp24-RRM2 bound to a fragment of U6 RNA
Descriptor: 5'-R(*AP*GP*AP*GP*AP*U)-3', U4/U6 snRNA-associated-splicing factor PRP24
Authors:Martin-Tumasz, S.A, Butcher, S.E.
Deposit date:2009-03-27
Release date:2010-03-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and functional implications of a complex containing a segment of U6 RNA bound by a domain of Prp24.
Rna, 16, 2010
2LK3
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BU of 2lk3 by Molmil
U2/U6 Helix I
Descriptor: RNA (5'-R(*GP*GP*CP*UP*UP*AP*GP*AP*UP*CP*AP*GP*AP*AP*AP*UP*GP*AP*UP*CP*AP*GP*CP*C)-3')
Authors:Burke, J.E, Sashital, D.G, Zuo, X.E, Wang, Y, Butcher, S.E.
Deposit date:2011-10-03
Release date:2012-02-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the yeast U2/U6 snRNA complex.
Rna, 18, 2012
6PPN
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BU of 6ppn by Molmil
Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA
Descriptor: Mimic of unprocessed U6 snRNA, Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, ...
Authors:Montemayor, E.J, Butcher, S.E.
Deposit date:2019-07-08
Release date:2020-06-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
6PFQ
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BU of 6pfq by Molmil
Structure of Kluyveromyces marxianus Usb1
Descriptor: GLYCEROL, Uncharacterized protein YLR132C
Authors:Nomura, Y, Montemayor, E.J, Butcher, S.E.
Deposit date:2019-06-21
Release date:2019-12-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the evolution of cyclic phosphodiesterase activity in the U6 snRNA exoribonuclease Usb1.
Nucleic Acids Res., 48, 2020
6PPQ
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BU of 6ppq by Molmil
Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' adenosine
Descriptor: Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, RNA (5'-R(*UP*UP*UP*UP*UP*A)-3'), ...
Authors:Montemayor, E.J, Butcher, S.E.
Deposit date:2019-07-08
Release date:2020-06-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
8TNS
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BU of 8tns by Molmil
Solution structure of poly(UG) RNA (GU)12 G-quadruplex
Descriptor: RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*U)-3')
Authors:Escobar, C.A, Petersen, R, Butcher, S.E.
Deposit date:2023-08-02
Release date:2023-11-15
Last modified:2024-05-15
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution Structure of Poly(UG) RNA.
J.Mol.Biol., 435, 2023
4N0T
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BU of 4n0t by Molmil
Core structure of the U6 small nuclear ribonucleoprotein at 1.7 Angstrom resolution
Descriptor: SULFATE ION, U4/U6 snRNA-associated-splicing factor PRP24, U6 snRNA
Authors:Montemayor, E.J, Curran, E.C, Liao, H, Andrews, K.L, Treba, C.N, Butcher, S.E, Brow, D.A.
Deposit date:2013-10-02
Release date:2014-05-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Core structure of the U6 small nuclear ribonucleoprotein at 1.7- angstrom resolution.
Nat.Struct.Mol.Biol., 21, 2014
5UQJ
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BU of 5uqj by Molmil
Structure of yeast Usb1
Descriptor: ACETATE ION, GLYCEROL, SULFATE ION, ...
Authors:Didychuk, A.L, Montemayor, E.J, Butcher, S.E.
Deposit date:2017-02-08
Release date:2017-08-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
5V1M
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BU of 5v1m by Molmil
Structure of human Usb1 with uridine 5'-monophosphate
Descriptor: CHLORIDE ION, GLYCEROL, U6 snRNA phosphodiesterase, ...
Authors:Montemayor, E.J, Didychuk, A.L, Butcher, S.E.
Deposit date:2017-03-02
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
6ASO
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BU of 6aso by Molmil
Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Montemayor, E.J, Brow, D.A, Butcher, S.E.
Deposit date:2017-08-25
Release date:2018-05-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.
Nat Commun, 9, 2018
6E7L
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BU of 6e7l by Molmil
Structure of a dimerized UUCG motif
Descriptor: RNA (5'-R(*GP*GP*GP*CP*UP*GP*CP*AP*CP*UP*UP*CP*GP*GP*UP*GP*CP*UP*GP*CP*CP*C)-3')
Authors:Montemayor, E.J, Butcher, S.E.
Deposit date:2018-07-26
Release date:2019-07-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structure of an RNA helix with pyrimidine mismatches and cross-strand stacking.
Acta Crystallogr.,Sect.F, 75, 2019
2L9W
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BU of 2l9w by Molmil
Solution Structure of the C-terminal domain of Prp24
Descriptor: U4/U6 snRNA-associated-splicing factor PRP24
Authors:Martin-Tumasz, S.A, Butcher, S.E.
Deposit date:2011-02-25
Release date:2011-06-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A novel occluded RNA recognition motif in Prp24 unwinds the U6 RNA internal stem loop.
Nucleic Acids Res., 39, 2011
2O32
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BU of 2o32 by Molmil
Solution structure of U2 snRNA stem I from human, containing modified nucleotides
Descriptor: 5'-R(*(PSU)P*CP*UP*CP*(OMG)P*(OMG)P*CP*CP*(PSU)P*UP*UP*UP*(OMG)P*GP*CP*UP*AP*AP*(OMG)P*A)-3'
Authors:Sashital, D.G, Venditti, V, Angers, C.G, Cornilescu, G, Butcher, S.E.
Deposit date:2006-11-30
Release date:2007-02-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human.
Rna, 13, 2007
2O33
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BU of 2o33 by Molmil
Solution structure of U2 snRNA stem I from S. cerevisiae
Descriptor: U2 snRNA
Authors:Sashital, D.G, Venditti, V, Angers, C.A, Cornilescu, G, Butcher, S.E.
Deposit date:2006-11-30
Release date:2007-02-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human.
Rna, 13, 2007
2N8V
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BU of 2n8v by Molmil
An NMR/SAXS structure of the PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES
Descriptor: RNA (70-MER)
Authors:Au, H.H, Cornilescu, G, Mouzakis, K.D, Burke, J.E, Ren, Q, Lee, S, Butcher, S.E, Jan, E.
Deposit date:2015-10-27
Release date:2015-11-11
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection.
Proc.Natl.Acad.Sci.USA, 112, 2015
2N7M
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BU of 2n7m by Molmil
NMR-SAXS/WAXS Structure of the core of the U4/U6 di-snRNA
Descriptor: RNA (92-MER)
Authors:Cornilescu, G, Didychuk, A.L, Rodgers, M.L, Michael, L.A, Burke, J.E, Montemayor, E.J, Hoskins, A.A, Butcher, S.E, Tonelli, M.
Deposit date:2015-09-14
Release date:2015-12-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Analysis of Multi-Helical RNAs by NMR-SAXS/WAXS: Application to the U4/U6 di-snRNA.
J.Mol.Biol., 428, 2016
2L94
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BU of 2l94 by Molmil
Structure of the HIV-1 frameshift site RNA bound to a small molecule inhibitor of viral replication
Descriptor: N'-{(Z)-amino[4-(amino{[3-(dimethylammonio)propyl]iminio}methyl)phenyl]methylidene}-N,N-dimethylpropane-1,3-diaminium, RNA_(45-MER)
Authors:Marcheschi, R.J, Tonelli, M, Kumar, A, Butcher, S.E.
Deposit date:2011-01-29
Release date:2011-06-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the HIV-1 Frameshift Site RNA Bound to a Small Molecule Inhibitor of Viral Replication.
Acs Chem.Biol., 6, 2011
2LKR
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BU of 2lkr by Molmil
Yeast U2/U6 complex
Descriptor: RNA (111-MER)
Authors:Burke, J.E, Sashital, D.G, Zuo, X, Wang, Y, Butcher, S.E.
Deposit date:2011-10-19
Release date:2012-02-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the yeast U2/U6 snRNA complex.
Rna, 18, 2012
6D31
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BU of 6d31 by Molmil
Structure of human Usb1 with adenosine 5'-monophosphate
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, GLYCEROL, ...
Authors:Nomura, Y, Montemayor, E.J, Butcher, S.E.
Deposit date:2018-04-14
Release date:2018-09-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
6D2Z
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BU of 6d2z by Molmil
Structure of human Usb1 with uridine-adenosine, inactive H208Q mutant
Descriptor: 5'-R(UP*A)-3'), CHLORIDE ION, U6 snRNA phosphodiesterase
Authors:Nomura, Y, Montemayor, E.J, Butcher, S.E.
Deposit date:2018-04-14
Release date:2018-09-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018

 

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