| News on 2014-12-24 Beginning at 9:00 a.m. on January 27, 2015 (JST) crystal structures should be submitted using the wwPDB Deposition Tool. ADIT will continue to accept depositions from other experimental methods, such as NMR or Electron Microscopy. wwPDB launched the ... |
| News on 2014-12-3 The jV 4.4.2 is now released. Although there is no change in function, the signature is updated. The certificate used for signing to jV 4.4.1 will expire on 21th Dec. 2014, so you need update the jV to 4.4.2 if you use jV as applet. For stand alone jV, ... |
| PDB bundle Due to the size of the large structures, they are not compatible with the legacy pdb format. For this reason these entries are only released using the PDBx/mmCIF and PDBML formats. However, since many legacy software still cannot properly load the PDBx/ ... |
| Integration of Large Structures with the Main PDB Archive ( wwPDB News ) Integration of Large Structures with the Main PDB Archive (wwPDB News) |
| News on 2014-11-26 Beginning at January 27, 2015 crystal structures should be submitted using the wwPDB Deposition Tool. ADIT will continue to accept depositions from other experimental methods. wwPDB launched the Deposition Tool for structures determined using X-ray ... |
| Structure Navigator URL: https://pdbj.org/strucNavi Structure Navigator is a search engine for protein tertiary structures. Given a query structure, Structure Navigator produces a list of structural domain s (here referred to astemplates) that are similar to the query, ... |
| Inclusion of Large Structures in the Main PDB Archive ( wwPDB News ) Inclusion of Large Structures in the Main PDB Archive (wwPDB News) |
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| Formats available in PDBj REST services Fetch API file formats The following table lists the available file formats usable with download and display REST services for PDB files. mmcifPDB data (noatom+atom) in PDBx/mmcif format mmjson-allPDB data (noatom+atom) in mmjson format mmjson-noatomPDB ... |
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| Polygon files Molmil and jV can load polygon-xml files to display non-PDB 3D structures, such as e.g. electron densities and surfaces. The polygon-xml schema file is available here. |
| CIF Query Service About The CIF query service can be used to extract parts of an mmCIF file in a similar manner as the XPath search does for PDBML files, but contrarily to the XPath search service it does not have support for conditional searching. However contrarily to the ... |
| wwPDB Events at IUCr (August 5-12) ( wwPDB News ) wwPDB Events at IUCr (August 5-12) (wwPDB News) |
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| News on 2014-7-9 Large Structures has been released" /> Improved Representation of Large Structures in the PDB Archive (wwPDB News) |
| PDB Reaches a New Milestone: 100,000+ Entries ( wwPDB News ) PDB Reaches a New Milestone: 100,000+ Entries (wwPDB News) |
| The Road to 100,000 Entries: Launching Tools for the Next Generation ( wwPDB News ) The Road to 100,000 Entries: Launching Tools for the Next Generation (wwPDB News) |
| The Road to 100,000 Entries: The Early Structures ( wwPDB News ) The Road to 100,000 Entries: The Early Structures (wwPDB News) |
| The Road to 100,000 Entries: Building a Community Resource ( wwPDB News ) The Road to 100,000 Entries: Building a Community Resource (wwPDB News) |
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PDB entries from 2024-05-01
