Beginning at January 27, 2015 crystal structures should be submitted using the wwPDB Deposition Tool. ADIT will continue to accept depositions from other experimental methods. wwPDB launched the Deposition Tool for structures determined using X-ray ...

URL: https://pdbj.org/strucNavi Structure Navigator is a search engine for protein tertiary structures. Given a query structure, Structure Navigator produces a list of structural domain s (here referred to astemplates) that are similar to the query, ...

Inclusion of Large Structures in the Main PDB Archive (wwPDB News)

To prevent our servers from being abused by spammers as a tool to send spam emails, PDBj's services which require users to validate that they are actual human users and not secretly bots trying to send thousands of emails per second. These services use the ...

Note: All changes made on the Settings page will be saved immediately. Color theme Personalize your PDBj experience by choosing your preferred Color theme. Newweb lite mode Enabling this options causes the initial interface to be generated on the client- ...

PDBj has released a new service 'Chemie search'. And the 'search bar' is modified and allows you to more quickly find the resource or service you're looking for.

Purpose Also known as memory or concentration, you have to find all card pairs with the same image. Complete the entire deck to win the game. Controls Hover with your mouse over one of the (unsolved) cards and click on it with the left mouse button. The ...

Play our snake game! How to play Play our pelmanism game! How to play

Purpose Assemble the amino acids in the determined order to win the game. Controls Move the ribosome with the arrow buttons (hold the button to engage the turbo). After comming in contact with the target amino acid it will automatically be incorperated ...

Fetch API file formats The following table lists the available file formats usable with download and display REST services for PDB files. mmcifPDB data (noatom+atom) in PDBx/mmcif format mmjson-allPDB data (noatom+atom) in mmjson format mmjson-noatomPDB ...

Introduction The PDBj web interface has been designed to find the perfect balance between usability, performance and efficiency. With these goals in mind, the interface has been split up into two components: - The server-side REST interface - The client ...

Interface The mine PDB Explorer interface is split up into the following three components: - Title panel - Tab content - Right side menu Title panel The title panel holds the entry title and description. Furthermore, it also lists the available tabs (See ...

Molmil and jV can load polygon-xml files to display non-PDB 3D structures, such as e.g. electron densities and surfaces. The polygon-xml schema file is available here.

About The CIF query service can be used to extract parts of an mmCIF file in a similar manner as the XPath search does for PDBML files, but contrarily to the XPath search service it does not have support for conditional searching. However contrarily to the ...

wwPDB Events at IUCr (August 5-12) (wwPDB News)

As announced previously, PDBMLplus files provided from PDBj ftp site has been frozen on 9 July, and will not be updated. Alternatively, you can use the interface in PDBj Mine, which generates it on demand from now on as follows; - Merged on demand for ...

Large Structures has been released" /> Improved Representation of Large Structures in the PDB Archive (wwPDB News)

PDB Reaches a New Milestone: 100,000+ Entries (wwPDB News)

The Road to 100,000 Entries: Launching Tools for the Next Generation (wwPDB News)

The Road to 100,000 Entries: The Early Structures (wwPDB News)

The Road to 100,000 Entries: Building a Community Resource (wwPDB News)

We'll finish to provide the PDBMLplus from FTP site We are providing the PDBMLplus, which is created by adding extra information collected by PDBj into PDBML-noatom (canonical PDB data file with XML format without atom coordinates), in following two ...

The jV 4.4 was released We announce the new version of jV (jV 4.4) was released. In this version, load/save function of mmCIF format file and biological unit was implemented. And the default URL of PDBMLplus file was changed. So we recommend for all jV ...

In addition to fasta sequence information ('fasta_seq_data/PDBID_seq.txt') for each PDB entry, a fasta file for all the sequence information ('all_fasta_sequence.txt.gz') is now available from the PDBj ftp site.

wwPDB X-ray validation reports added to PDB archive (wwPDB News)