Theoretical models About theoretical models. Theoretical models PDBIDTitleAuthors 163dA THREE-DIMENSIONAL MODEL OF THE REV BINDING ELEMENT OF HIV- 1 DERIVED FROM ANALYSES OF IN VITRO SELECTED VARIANTS F.LECLERC,R.J.CEDERGREN,A.D.ELLINGTON DisplayDownload 1a20MOLECULAR ... |
PDBj has released the electron density maps in the ccp4 format. PDBj has released the electron density maps in the ccp4 format. The ccp4 formatted file of each entry is downloaded from Electron Density Map page through http protocol. The ccp4 formatted files of all entries that have Electron Density Maps are also ... |
Changes to the Release Process for PDB Entries ( wwPDB News ) Changes to the Release Process for PDB Entries (wwPDB News) |
Theoretical Models Theoretical Models The PDB separated theoretical model coordinate files from the main archive beginning July 1, 2002. After that date, the main archive has consisted of structures determined using experimental methods only. Theoretical models are only ... |
download of functional details data -FAQ Q) Where can I download the data such as CSA, mentioned in theFunctional Detailspage? A) Functional Details is additional information extracted by PDBj and not contained in the PDBML file. The information is contained in the PDBMLplus file, which is ... |
News on 2015-1-27 Beginning at 9:00 a.m. on January 27, 2015 (JST), ADIT deposition system no longer accepts new submissions of crystal structures. Crystal structures should be submitted using the wwPDB Deposition Tool. ADIT will be available for users to finalize in- ... |
News on 2014-12-24 Beginning at 9:00 a.m. on January 27, 2015 (JST) crystal structures should be submitted using the wwPDB Deposition Tool. ADIT will continue to accept depositions from other experimental methods, such as NMR or Electron Microscopy. wwPDB launched the ... |
News on 2014-12-3 The jV 4.4.2 is now released. Although there is no change in function, the signature is updated. The certificate used for signing to jV 4.4.1 will expire on 21th Dec. 2014, so you need update the jV to 4.4.2 if you use jV as applet. For stand alone jV, ... |
PDB bundle Due to the size of the large structures, they are not compatible with the legacy pdb format. For this reason these entries are only released using the PDBx/mmCIF and PDBML formats. However, since many legacy software still cannot properly load the PDBx/ ... |
Integration of Large Structures with the Main PDB Archive ( wwPDB News ) Integration of Large Structures with the Main PDB Archive (wwPDB News) |
News on 2014-11-26 Beginning at January 27, 2015 crystal structures should be submitted using the wwPDB Deposition Tool. ADIT will continue to accept depositions from other experimental methods. wwPDB launched the Deposition Tool for structures determined using X-ray ... |
Structure Navigator URL: https://pdbj.org/strucNavi Structure Navigator is a search engine for protein tertiary structures. Given a query structure, Structure Navigator produces a list of structural domain s (here referred to astemplates) that are similar to the query, ... |
Inclusion of Large Structures in the Main PDB Archive ( wwPDB News ) Inclusion of Large Structures in the Main PDB Archive (wwPDB News) |
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Formats available in PDBj REST services Fetch API file formats The following table lists the available file formats usable with download and display REST services for PDB files. mmcifPDB data (noatom+atom) in PDBx/mmcif format mmjson-allPDB data (noatom+atom) in mmjson format mmjson-noatomPDB ... |
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Polygon files Molmil and jV can load polygon-xml files to display non-PDB 3D structures, such as e.g. electron densities and surfaces. The polygon-xml schema file is available here. |
CIF Query Service About The CIF query service can be used to extract parts of an mmCIF file in a similar manner as the XPath search does for PDBML files, but contrarily to the XPath search service it does not have support for conditional searching. However contrarily to the ... |
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