PDB: 54 件ウェブページステータス検索Chemie searchBIRD

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3F10	Crystal structure of Clostridium Acetobutylicum 8-oxoguanine DNA glycosylase in complex with 8-oxoguanosine 分子名称: 1,2-ETHANEDIOL, 2'-DEOXY-8-OXOGUANOSINE, 8-oxoguanine-DNA-glycosylase 著者 Faucher, F, Doublie, S. 登録日 2008-10-27 公開日 2009-04-07 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural characterization of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase in its apo form and in complex with 8-oxodeoxyguanosine. J.Mol.Biol., 387, 2009
3F0Z	Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in its apo-form 分子名称: 8-oxoguanine-DNA-glycosylase, GLYCEROL 著者 Faucher, F, Doublie, S. 登録日 2008-10-27 公開日 2009-04-07 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural characterization of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase in its apo form and in complex with 8-oxodeoxyguanosine. J.Mol.Biol., 387, 2009
1YQM	Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNA 分子名称: 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(7GU)P*GP*TP*CP*TP*AP*C)-3', CALCIUM ION, ... 著者 Banerjee, A, Yang, W, Karplus, M, Verdine, G.L. 登録日 2005-02-02 公開日 2005-04-05 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA. Nature, 434, 2005
1YQK	Human 8-oxoguanine glycosylase crosslinked with guanine containing DNA 分子名称: 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*G)-3', 5'-D(P*CP*AP*GP*GP*TP*CP*TP*AP*C)-3', CALCIUM ION, ... 著者 Banerjee, A, Yang, W, Karplus, M, Verdine, G.L. 登録日 2005-02-01 公開日 2005-04-05 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA. Nature, 434, 2005
1YQR	Catalytically inactive human 8-oxoguanine glycosylase crosslinked to oxoG containing DNA 分子名称: 5'-D(P*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3', CALCIUM ION, ... 著者 Banerjee, A, Yang, W, Karplus, M, Verdine, G.L. 登録日 2005-02-02 公開日 2005-04-05 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA. Nature, 434, 2005
1YQL	Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNA 分子名称: 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(PPW)P*GP*TP*CP*TP*AP*C)-3', CALCIUM ION, ... 著者 Banerjee, A, Yang, W, Karplus, M, Verdine, G.L. 登録日 2005-02-02 公開日 2005-04-05 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA. Nature, 434, 2005
7ZC7	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH012941 分子名称: 2-[4-(3,5-dimethylpyrazol-1-yl)phenyl]-~{N}-(4,5,6,7-tetrahydro-1,2-benzoxazol-3-yl)ethanamide, N-glycosylase/DNA lyase, NICKEL (II) ION 著者 Davies, J.R, Scaletti, E, Stenmark, P. 登録日 2022-03-25 公開日 2023-07-05 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH012941 To Be Published
7Z5R	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH012035 分子名称: (7~{R})-~{N}-(4,5,6,7-tetrahydro-1,2-benzoxazol-3-yl)bicyclo[4.2.0]octa-1,3,5-triene-7-carboxamide, N-glycosylase/DNA lyase, NICKEL (II) ION 著者 Davies, J.R, Scaletti, E, Stenmark, P. 登録日 2022-03-09 公開日 2023-03-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH012035 To Be Published
7Z3Y	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH013545 分子名称: 2-[4-(3,5-dimethylpyrazol-1-yl)-2,6-bis(fluoranyl)phenyl]-~{N}-(4,5,6,7-tetrahydro-1,2-benzoxazol-3-yl)ethanamide, GLYCEROL, N-glycosylase/DNA lyase, ... 著者 Scaletti, E.R, Stenmark, P. 登録日 2022-03-02 公開日 2023-03-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH013545 To Be Published
7Z5B	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH013546 分子名称: 2-[4-(2,4-dimethyl-1~{H}-imidazol-5-yl)phenyl]-~{N}-(4,5,6,7-tetrahydro-1,2-benzoxazol-3-yl)ethanamide, N-glycosylase/DNA lyase, NICKEL (II) ION 著者 Scaletti, E, Stenmark, P. 登録日 2022-03-08 公開日 2023-03-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH013546 To Be Published
3I0X	Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoG 分子名称: 5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*AP*TP*GP*GP*A)-3', 8-oxoguanine-DNA-glycosylase, ... 著者 Faucher, F, Doublie, S. 登録日 2009-06-25 公開日 2009-09-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis for the lack of opposite base specificity of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase. Dna Repair, 8, 2009
3I0W	Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoG 分子名称: 1,2-ETHANEDIOL, 5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3', ... 著者 Faucher, F, Doublie, S. 登録日 2009-06-25 公開日 2009-09-29 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 Structural basis for the lack of opposite base specificity of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase. Dna Repair, 8, 2009
2I5W	Structure of hOGG1 crosslinked to DNA sampling a normal G adjacent to an oxoG 分子名称: 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3', 5'-D(P*CP*CP*AP*GP*(G42)P*TP*CP*TP*AP*C)-3', CALCIUM ION, ... 著者 Banerjee, A, Verdine, G.L. 登録日 2006-08-26 公開日 2006-10-17 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A nucleobase lesion remodels the interaction of its normal neighbor in a DNA glycosylase complex. Proc.Natl.Acad.Sci.Usa, 103, 2006
2NOL	Structure of catalytically inactive human 8-oxoguanine glycosylase distal crosslink to oxoG DNA 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', CALCIUM ION, ... 著者 Banerjee, A, Radom, C.T, Verdine, G.L. 登録日 2006-10-25 公開日 2006-11-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations. J.Biol.Chem., 282, 2007
2NOH	Structure of catalytically inactive Q315A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNA 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', CALCIUM ION, ... 著者 Radom, C.T, Banerjee, A, Verdine, G.L. 登録日 2006-10-25 公開日 2006-11-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations. J.Biol.Chem., 282, 2007
2NOF	Structure of Q315F human 8-oxoguanine glycosylase proximal crosslink to 8-oxoguanine DNA 分子名称: 5'-D(*GP*CP*GP*TP*C*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', CALCIUM ION, ... 著者 Radom, C.T, Banerjee, A, Verdine, G.L. 登録日 2006-10-25 公開日 2006-11-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations. J.Biol.Chem., 282, 2007
2NOZ	Structure of Q315F human 8-oxoguanine glycosylase distal crosslink to 8-oxoguanine DNA 分子名称: 5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', CALCIUM ION, ... 著者 Radom, C.T, Banerjee, A, Verdine, G.L. 登録日 2006-10-26 公開日 2006-11-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations. J.Biol.Chem., 282, 2007
2NOI	Structure of G42A human 8-oxoguanine glycosylase crosslinked to undamaged G-containing DNA 分子名称: 5'-D(*GP*CP*GP*TP*C*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', CALCIUM ION, ... 著者 Radom, C.T, Banerjee, A, Verdine, G.L. 登録日 2006-10-25 公開日 2006-11-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations. J.Biol.Chem., 282, 2007
2NOB	Structure of catalytically inactive H270A human 8-oxoguanine glycosylase crosslinked to 8-oxoguanine DNA 分子名称: 5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*T*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', CALCIUM ION, ... 著者 Radom, C.T, Banerjee, A, Verdine, G.L. 登録日 2006-10-25 公開日 2006-11-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations. J.Biol.Chem., 282, 2007
2NOE	Structure of catalytically inactive G42A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNA 分子名称: 5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', CALCIUM ION, ... 著者 Radom, C.T, Banerjee, A, Verdine, G.L. 登録日 2006-10-25 公開日 2006-11-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations. J.Biol.Chem., 282, 2007
1KO9	Native Structure of the Human 8-oxoguanine DNA Glycosylase hOGG1 分子名称: 8-oxoguanine DNA glycosylase, SULFATE ION 著者 Bjoras, M, Seeberg, E, Luna, L, Pearl, L.H, Barrett, T.E. 登録日 2001-12-20 公開日 2002-01-09 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Reciprocal "flipping" underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase. J.Mol.Biol., 317, 2002
1LWW	Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-BROMOGUANINE, ... 著者 Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L. 登録日 2002-06-03 公開日 2003-02-25 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Product-Assisted Catalysis in Base Excision DNA Repair Nat.Struct.Biol., 10, 2003
1M3H	Crystal Structure of Hogg1 D268E Mutant with Product Oligonucleotide 分子名称: 5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3', 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3', ... 著者 Chung, S.J, Verdine, G.L. 登録日 2002-06-27 公開日 2004-04-20 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structures of End Products Resulting from Lesion Processing by a DNA Glycosylase/Lyase Chem.Biol., 11, 2004
1LWV	Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-AMINOGUANINE, ... 著者 Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L. 登録日 2002-06-03 公開日 2003-02-25 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Product-Assisted Catalysis in Base Excision DNA Repair Nat.Struct.Biol., 10, 2003
1LWY	hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanine 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-OXOGUANINE DNA GLYCOSYLASE 著者 Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L. 登録日 2002-06-03 公開日 2003-02-25 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Product-Assisted Catalysis in Base Excision DNA Repair Nat.Struct.Biol., 10, 2003

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