PDB: 220 件ウェブページステータス検索Chemie searchBIRD

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6XV1	Human Sirt6 13-308 in complex with ADP-ribose and the activator MDL-801 分子名称: 5-[[3,5-bis(chloranyl)phenyl]sulfonylamino]-2-[(5-bromanyl-4-fluoranyl-2-methyl-phenyl)sulfamoyl]benzoic acid, NAD-dependent protein deacetylase sirtuin-6, SULFATE ION, ... 著者 You, W, Steegborn, C. 登録日 2020-01-21 公開日 2020-10-28 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Binding site for activator MDL-801 on SIRT6. Nat.Chem.Biol., 17, 2021
6XUY	Human Sirt6 13-308 in complex with ADP-ribose 分子名称: NAD-dependent protein deacetylase sirtuin-6, SULFATE ION, TRIETHYLENE GLYCOL, ... 著者 You, W, Steegborn, C. 登録日 2020-01-21 公開日 2020-10-28 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Binding site for activator MDL-801 on SIRT6. Nat.Chem.Biol., 17, 2021
5OJN	Sirtuin 4 from Xenopus tropicalis in complex with thioacetyl-ADP-ribose 分子名称: NAD-dependent protein deacylase, ZINC ION, thioacetyl-ADP-ribose 著者 Pannek, M, Steegborn, C. 登録日 2017-07-22 公開日 2017-11-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structures of the mitochondrial deacylase Sirtuin 4 reveal isoform-specific acyl recognition and regulation features. Nat Commun, 8, 2017
6XVG	Human Sirt6 3-318 in complex with ADP-ribose and the activator MDL-801 分子名称: 5-[[3,5-bis(chloranyl)phenyl]sulfonylamino]-2-[(5-bromanyl-4-fluoranyl-2-methyl-phenyl)sulfamoyl]benzoic acid, GLYCEROL, NAD-dependent protein deacetylase sirtuin-6, ... 著者 You, W, Steegborn, C. 登録日 2020-01-22 公開日 2020-10-28 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Binding site for activator MDL-801 on SIRT6. Nat.Chem.Biol., 17, 2021
6XV6	Human Sirt6 3-318 in complex with ADP-ribose 分子名称: GLYCEROL, NAD-dependent protein deacetylase sirtuin-6, NICOTINAMIDE, ... 著者 You, W, Steegborn, C. 登録日 2020-01-21 公開日 2020-10-28 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Binding site for activator MDL-801 on SIRT6. Nat.Chem.Biol., 17, 2021
5OL0	Structure of Leishmania infantum Silent Information Regulator 2 related protein 1 (LiSIR2rp1) in complex with acetylated p53 peptide 分子名称: Cellular tumor antigen p53, Putative silent information regulator 2,Putative silent information regulator 2, ZINC ION 著者 Ronin, C, Ciesielski, F, Ciapetti, P. 登録日 2017-07-26 公開日 2018-02-28 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 The crystal structure of the Leishmania infantum Silent Information Regulator 2 related protein 1: Implications to protein function and drug design. PLoS ONE, 13, 2018
5OJ7	Sirtuin 4 orthologue from Xenopus Tropicalis in complex with ADP-ribose 分子名称: 1,2-ETHANEDIOL, GLYCEROL, NAD-dependent protein deacylase, ... 著者 Pannek, M, Steegborn, C. 登録日 2017-07-20 公開日 2017-11-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Crystal structures of the mitochondrial deacylase Sirtuin 4 reveal isoform-specific acyl recognition and regulation features. Nat Commun, 8, 2017
5OJO	Sirtuin 5 from Danio rerio in complex with 3-hydroxy-3-methylglutaryl-CPS1 peptide 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Carbamoyl-phosphate synthase [ammonia], ... 著者 Pannek, M, Steegborn, C. 登録日 2017-07-22 公開日 2017-11-29 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal structures of the mitochondrial deacylase Sirtuin 4 reveal isoform-specific acyl recognition and regulation features. Nat Commun, 8, 2017
8TGP	Crystal structure of SIRT2 with FAM-PEG4-H4K16(myristoyl) peptide 分子名称: H4K16(myristoyl) peptide, MYRISTIC ACID, NAD-dependent protein deacetylase sirtuin-2, ... 著者 Nicely, N.I, Weiser, B.P. 登録日 2023-07-12 公開日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Effects of Dimerization on the Deacylase Activities of Human SIRT2. Biochemistry, 62, 2023
8V2N	Human SIRT3 co-crystallized with ligands, including p53-AMC peptide and Carba-NAD 分子名称: CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, GLN-PRO-LYS-FDL, NAD-dependent protein deacetylase sirtuin-3, ... 著者 Chakrabarti, R, Ghosh, A, Guan, X, Upadhyay, A, Dumpati, R.K, Munshi, S, Roy, S, Chall, S, Rahnamoun, A, Reverdy, C, Errasti, G, Delacroix, T. 登録日 2023-11-23 公開日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Computationally Driven Discovery and Characterization of SIRT3 Activating Compounds that Fully Recover Catalytic Activity under NAD+ Depletion biorxiv, 2023
8V15	Human SIRT3 bound to p53-AMC peptide, Carba-NAD, and Honokiol 分子名称: (1P)-3',5-di(prop-2-en-1-yl)[1,1'-biphenyl]-2,4'-diol, CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, GLN-PRO-LYS-FDL, ... 著者 Chakrabarti, R, Ghosh, A, Guan, X, Upadhyay, A, Dumpati, R.K, Munshi, S, Roy, S, Chall, S, Rahnamoun, A, Reverdy, C, Errasti, G, Delacroix, T. 登録日 2023-11-19 公開日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Computationally Driven Discovery and Characterization of SIRT3 Activating Compounds that Fully Recover Catalytic Activity under NAD+ Depletion biorxiv, 2023
2OD9	Structural Basis for Nicotinamide Inhibition and Base Exchange in Sir2 Enzymes 分子名称: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE, H4 peptide, NAD-dependent deacetylase HST2, ... 著者 Marmorstein, R, Sanders, B.D. 登録日 2006-12-21 公開日 2007-02-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural basis for nicotinamide inhibition and base exchange in sir2 enzymes. Mol.Cell, 25, 2007
2OD7	Crystal Structure of yHst2 bound to the intermediate analogue ADP-HPD, and and aceylated H4 peptide 分子名称: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE, Acetylated histone H4 peptide, NAD-dependent deacetylase HST2, ... 著者 Marmorstein, R.Q, Sanders, B.D. 登録日 2006-12-21 公開日 2007-02-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for nicotinamide inhibition and base exchange in sir2 enzymes. Mol.Cell, 25, 2007
2NYR	Crystal Structure of Human Sirtuin Homolog 5 in Complex with Suramin 分子名称: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFON IC ACID, NAD-dependent deacetylase sirtuin-5, ZINC ION 著者 Min, J.R, Antoshenko, T, Allali-Hassani, A, Dong, A, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC) 登録日 2006-11-21 公開日 2006-12-19 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Structural basis of inhibition of the human NAD+-dependent deacetylase SIRT5 by suramin. Structure, 15, 2007
2OD2	Crystal Structure of yHst2 I117F mutant bound to carba-NAD+ and an acetylated H4 peptide 分子名称: Acetylated H4 peptide, CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, GLYCEROL, ... 著者 Sanders, B.D. 登録日 2006-12-21 公開日 2007-02-20 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for nicotinamide inhibition and base exchange in sir2 enzymes. Mol.Cell, 25, 2007
3D81	Sir2-S-alkylamidate complex crystal structure 分子名称: NAD-dependent deacetylase, S-alkylamidate intermediate, ZINC ION 著者 Hawse, W.F, Hoff, K.G, Fatkins, D, Daines, A, Zubkova, O.V, Schramm, V.L, Zheng, W, Wolberger, C. 登録日 2008-05-22 公開日 2008-09-30 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural insights into intermediate steps in the Sir2 deacetylation reaction. Structure, 16, 2008
6ZU4	Human Sirt6 13-308 in complex with ADP-ribose and the activator fluvastatin 分子名称: (3R,5S,6E)-7-[3-(4-fluorophenyl)-1-(propan-2-yl)-1H-indol-2-yl]-3,5-dihydroxyhept-6-enoic acid, GLYCEROL, NAD-dependent protein deacetylase sirtuin-6, ... 著者 You, W, Steegborn, C. 登録日 2020-07-21 公開日 2020-11-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Structural Basis for Activation of Human Sirtuin 6 by Fluvastatin. Acs Med.Chem.Lett., 11, 2020
3U31	Plasmodium falciparum Sir2A preferentially hydrolyzes medium and long chain fatty acyl lysine 分子名称: GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Transcriptional regulatory protein sir2 homologue, ... 著者 Zhou, Y, Hao, Q. 登録日 2011-10-04 公開日 2011-11-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Plasmodium falciparum Sir2A Preferentially Hydrolyzes Medium and Long Chain Fatty Acyl Lysine Acs Chem.Biol., 2011
8HN9	Human SIRT3 Recognizing CCNE2K348la peptide 分子名称: CCNE2 peptide, IMIDAZOLE, NAD-dependent protein deacetylase sirtuin-3, ... 著者 Wang, Y, Ding, W. 登録日 2022-12-07 公開日 2023-05-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 SIRT3-dependent delactylation of cyclin E2 prevents hepatocellular carcinoma growth. Embo Rep., 24, 2023
8HLY	Crystal structure of SIRT3 in complex with H3K23la peptide 分子名称: (2S)-2-HYDROXYPROPANOIC ACID, 1,2-ETHANEDIOL, GLYCEROL, ... 著者 Zhuming, F, Hao, Q. 登録日 2022-12-01 公開日 2023-09-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Identification of SIRT3 as an eraser of H4K16la. Iscience, 26, 2023
8HLW	Crystal structure of SIRT3 in complex with H4K16la peptide 分子名称: (2S)-2-HYDROXYPROPANOIC ACID, Histone H4 residues 20-27, NAD-dependent protein deacetylase sirtuin-3, ... 著者 Zhuming, F, Hao, Q. 登録日 2022-12-01 公開日 2023-09-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Identification of SIRT3 as an eraser of H4K16la. Iscience, 26, 2023
8I2B	Human SIRT6 in complex with inhibitor 7702 分子名称: N1-[[4-(4-aminophenyl)sulfanyl-3-(trifluoromethyl)phenyl]methoxy]benzene-1,4-dicarboxamide, NAD-dependent protein deacylase sirtuin-6, SULFATE ION, ... 著者 Wang, Y. 登録日 2023-01-14 公開日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The SIRT6 in complex with inhibitor 7702 To Be Published
7BOT	Human SIRT2 in complex with myristoyl thiourea inhibitor, No.23 分子名称: N-dodecylmethanethioamide, NAD-dependent protein deacetylase sirtuin-2, ZINC ION, ... 著者 Kudo, N, Olsen, C.A, Minoru, Y. 登録日 2020-03-19 公開日 2021-03-24 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Mechanism-based inhibitors of SIRT2: structure-activity relationship, X-ray structures, target engagement, regulation of alpha-tubulin acetylation and inhibition of breast cancer cell migration. Rsc Chem Biol, 2, 2021
7BOS	Human SIRT2 in complex with myristoyl thiourea inhibitor, No.13 分子名称: Myristoyl thiourea inhibitor, No.13, N-dodecylmethanethioamide, ... 著者 Kudo, N, Olsen, C.A, Minoru, Y. 登録日 2020-03-19 公開日 2021-03-24 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Mechanism-based inhibitors of SIRT2: structure-activity relationship, X-ray structures, target engagement, regulation of alpha-tubulin acetylation and inhibition of breast cancer cell migration. Rsc Chem Biol, 2, 2021
7CL1	Human SIRT6 in complex with allosteric activator MDL-801 (3.2A) 分子名称: 5-[[3,5-bis(chloranyl)phenyl]sulfonylamino]-2-[(5-bromanyl-4-fluoranyl-2-methyl-phenyl)sulfamoyl]benzoic acid, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Song, K, Zhang, J. 登録日 2020-07-20 公開日 2021-02-24 最終更新日 2021-05-12 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Reply to: Binding site for MDL-801 on SIRT6. Nat.Chem.Biol., 17, 2021

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